S2_list_of_bacterial_species_and_classification.docx

The Old Classification of Bacteria (The list of species) Species written in bold letters are most important PROKARYOTAE Division I. Gramnetive bacteria (Gracilicutes) 1. Group: Spirochets Genus: Treponema (T. paraluis-cuniculi, T. brennaborense) Genus: Borrelia (B. burgrdorferi, B. afzelli, B. garinii, B. miyamotoi, B. anserina B. theileri) Genus: Brachyspira (B. hyodysenteriae, B. pilosicoli, B. intermedia, B. murdochii, B. alvinipulli, B. innocens,) Genus: Leptospira (sérovary: L. Icterohaemorrhagiae, L. Pomona, L. Canicola, L. Sejroe, L. Bratislava, L. Hardjo, L. Grippotyphosa)

2. Group: Aerobic/micoraephilic, motile, spiral/vibroid G- bacteria

Family: Campylobacteriaece Genus: Campylobacter (C. fetus subsp. fetus, C. fetus subsp. veneralis, C. jejuni, C. coli, C. sputorum, C. upsalensis) Genus: Arcobacter (A. butzleri, A. cryaerophilus, A. skirrowii) Genus: Helicobacter (H. pylori, H. nemestrinae, H. acinonyx, H. fennelliae, H. hepaticus, H. muridarum, H. canis, H. suis, H. cinaedi, H. heilmannii, H. felis, H. pametensis, H. mustelae, H. pullorum, H. pamentensis, H. nemestrinae, H. rapini) Genus: Spirillum (S. minus)

3. Group: Non-motile curved , G- bacteria . 4. Group: G- aerobic/microaerphilic rods and cocci 4. A. PodGroup: aerobic rods and cocci Family: Pseudomonadaceae Genus: Pseudomonas (P. aeuroginosa, P. fluorescens, P. stutzeri, P. putida) Genus: Burkholderia (B. mallei, B. pseudomallei, B. cepacia) Family: Neisseriaceae Genus: Neisseria (N. canis, N.weaver, N. ovis ) Genus: Moraxella SubGenus: Moraxerlla (M. (M.) bovis, M.(M.) ovis, M(M). caprae, M. (M.) equi, M (M). boevrei, M. canis, M. cuniculi, M.caviae) SubGenus: Branhamella (M (B.) catharralis)

Genus: Chromobacterium (Ch. violaceum) Family: Flavobacteriaceae Genus: Flavobacterium (F. columnare, F. psychrophilum, F. branchiophilum) Genus: Ornithobacterium (O. rhinotracheale) Genus: Riemerella (R. anatipestifer, R. columbina) Family: Legionellaceae Genus: Legionella (L. pneumophila) Other Genera Genus: Acinetobacter (A. calcoaceticus) Genus: Alcaligenes (A. fecalis) Genus: Brucella (B. melitensis se sérovary: B. abortus, B. suis, B. canis, B. ovis, B. neotomae) Genus: Bordetella (B. bronchiseptica, B. hinzii, B. avium) Genus: Francisella (F. tularensis subsp.tularensis, F. tularensi subsp.novicida) Genus: Afipia (A. felis) Genus: Pelistega (P. europea) 4. B. Subgroup: microaerophilic rods Genus: Taylorella (T. equigenitalis)

5. Group: Facultative ananerobic G- rods Family: Enterobacteriaceae Genus: Escherichia (E. coli) Genus: Citrobacter (C. freundii, C. amalonaticus, C. diversus, C. koseri, C. sedlakii, C. farmeri, C. werkmanii, C. youngae, C. braakii) Genus: Klebsiella (Kl. pneumoniae subsp. pneumonie, Kl. pneumoniae subsp. ozaenae, Kl. pneumoniae subsp. rhinoscleromatis, Kl. oxytoca, Kl. terrigena, Kl. planticola) Genus: Shigella (S. dysenterie, S. boydii, S. flexneri, S. sonnei) Genus: Salmonella (S. enterica subsp. enterica wit serovars : S. Typhimurium, S.Agona, S. Choleraesius, S. Abortusequi, S. Enteritidis, S. Gallinarum, S. Pulorum, S. Dublin, S. Infantis, S. Saintpaul, S. Newport, S. Meleagridis, S.Typhisuis) Genus: Proteus (P. vulgaris, P. mirabilis, P. myxofaciens, P. penneri) Genus: Edwardsiella (E. tarda) Genus: Yersinia (Y. enterocolitica, Y. pestis, Y. pseudotuberculosis, Y. ruckeri) Genus: Enterobacter (E. cloacae, E. sakazakii, E. taylorae, E. aerogenes, E. gergoviae) Genus: Providencia (P. alcalifaciens, P. rettgeri, P. stuartii) Genus: Morganella (M. morganii subsp. morgani, M. morgani subsp. sibonii) Genus: Serratia (S. marcescens) Genus: Hafnia (H. alvei) Genus: Plesiomonas (P. shigeloides) Family: Pasteurellaceae Genus: Pasteurella (P. multocida: P. multocida subsp. gallicida, P. multocida subsp. multocida, P. multocida subsp. septica), P. trehalosi, P. canis, P. avium, P. cabali, P.gallinarum) Genus: Mannheimia (M. haemolytica, M. glucosida, M. granulomatis, M. ruminalis,

M. varigena) Genus: Haemophilus (H. parasuis, H. paragallinarum, H.paracuniculus, H.felis, H. agni, H. piscium, H.haemoglobinphilus) Genus: Histophilus (H. somnii) Genus: Actinobacillus (A.artritidis, A. equuli, A. capsulatus, A. hominis, A. lignieresii, A. muris, A. pleuropneumoniae, A. rossii, A. seminis, A. suis, A. ureae) Genus: Lonepinella (L. koalarum) Family: Aeromonadaceae Genus: Aeromonas (A. hydrophila, A. sobria, A. media,A.caviae, A. jandaei, A. veronii, A. salmonicida) Family: Vibrionaceae Genus: Vibrio (V. cholerae, V. metschnikovii, V. ordalii, V. parahaemolyticus) Genus: Listonella (L. anguillarum) Other Genera Genus: Gardnerella Genus: Eikennella

6. Group: Anaerobic curved, spiral and stright rods , Family: Bacteroidaceae Genus: Bacteroides (B. fragilis, B. asacharolyticus, B. vulgatus, B. ovatus , B. levii, B. thetiaotaomicron, B. uniformi) Genus: Dichelobacter (D. nodosus) Genus: Fusobacterium (F. necrophorum, F. equinum, F. nucleatum, F. risii) Genus: Streptobacillus (S. moniliformis) Genus: Porphyromonas (P. gingivalis, P. endodontalis, P. canoris, P. levii) Genus: Prevotella ( P. melaninogenica, P. heparinolytica, P. denticola, P. intermedia, P. nigrescens, P. buccalis, P. oralis) Genus: Capnocytophaga (C. gingivalis, C. canimorsus) 7. Group : Genus: Lawsonia (L .intracellularis) 8. Group: Anaerobic G- cocci Family: Veillonellaceae Genus: Veillonella (V. dispar) 9. Group: Rickettsie a Chlamydie Řád: Rickettsiales Family: Rickettsiaceae Genus: Rickettsia (R. rickettsii, R. typhi, R. felis, R. prowazekii) Genus: Coxiella (C. burnetii)

Family: Anaplasmataceae Genus: Neorickettsia (N. helminthoeca, N. risticii, N. sennetsu) Genus: Anaplasma (A. marginale, A. centrale, A. ovis, A.phagocytophilum) Genus: Ehrlichia (E. phagocytophila, E. canis, E. ruminantium)) Genus: Aegyptianella (A. pullorum) Family: Bartonellaceae Genus: Bartonella (B. henselae, B. bacilliformis, B. bovis, B. capreoli, B. quintana, B. vinsonii) Order: Chlamydiales Family: Chlamydiaceae Genus: Chlamydia (Ch. suis) Genus: Chlamydophilla (Ch. abortus, Ch. pneumoniae biovar equine, Ch. felis, Ch. psittaci, Ch. pecorum, Ch. caviae)

Division II. Grampositive bacteria (Formicutes) 1. Group: Gram-positive cocci 1a. Aerobic and facultative anaerobic Genus: Micrococcus (M. luteus) Genus: Kocuria (K. rosea) Genus: Staphylococcus (S. aureus, S. intermedius, S.pseudointermedius, S. hyicus, S. epidermidis, S. saprophyticus, S. chormogenes, S. lentus, S. caprae , S. equorum, S. felis) ) Genus: Rothia (Stomatococcus) Genus: Peptococcus (P. niger) Genus: Streptococcus (S. agalactiae, S. canis, S. equi subsp. equi, S. equis subsp. zooepidemicus, S.dysgalactiae ssp. dysgalactiae, S.dysgalactiae subsp. equisimilis, S. porcinus, S. uberis, S. suis, S. equinus) Genus: Peptostreptococcus (P. indologenes) Genus: Enterococcus (E. faecalis, E. faecium, E. caseliflavus , E.hirae, E. cecorum) Genus: Melisococcus (M. pluton) Genus: Lactococcus (L. lactis, L. rafinolactis)

2. Group: Endospores forming G+ rods Genus: Bacillus (B. anthracis, B. cereus, B. thuringiensis, B. subtilis, B.larvae) Genus: Clostridium (C. botulinum, C. tetani, C. perfringens, C. chauvoei, C. piliforme, C. septicum, C. novyi, C. haemolyticum, C. sordellii, C. histolyticum, C. difficile)

3. Group: Non- regular non sporeforming G+ rods Genus: Lactobacillus (L. delbrueckii subsp. bulgaricus, L. helveticus, L. curvatus, L. kefir, L. plantarum, L. sake) Genus: Listeria (L. monocytogenes, L. ivanovii, L. innocua, L. seeligeri, L. welshimeri) Genus. Erysipelothrix (E. rhusiopathiae, E. tonsilarum)

4. Group: Nonregular non spores forming G+ rods Genus: Corynebacterium (C. pseudotuberculosis, C. renale, C. cystitidis, C. bovis, C. pilosum, C. kutscheri, C. mastitidis, C. camporealensis, C. felinum, C. ulcerans) Genus: Rothia (R. dentocariosa) Genus: Arcanobacterium (A. pyogenes, A. haemolyticum) Genus: Actinomyces (A. bovis, A. israelii, A. viscosus, A. hordeovulneris) Genus: Eubacterium (E. multiforme, E. rectale, E. suis) Genus: Propionobacterium (P. acnes) Genus: Bifidobacterium (B. suis, B. gallinarum, B. cuniculi, B. ruminantium)

5. Group: Mycobacteria Family: Mycobacteriaceae

Genus: Mycobacterium (M. tuberculosis subsp. hominis, M. bovis, M.bovis subsp. caprae, M. microti, M. avium subsp. avium, M.avium subsp. Paratuberculosis, M. kansasii)

6. Group: Nokardioform bacteria Genus: Nocardia (N. asteroides, N. farcinica) Genus: Rhodococcus (R. equi)

Division III. Mycoplasma (Tenericutes) Class I. Mollicutes Order: Mycoplasmatales Family: Mycoplasmataceae Genus: Mycoplasma (M. bovis, M. disdpar - skot, M. agalactiae, M. putrefaciens M. hyopneumoniae, M. hyorhinis, M .hyosynoviae, , M. equigenitalium - . canis, M. felis -, M. gallisepticum, M. synoviae, M. meleagridis, M. iowae Haemothrofic mycoplasma clasified formaly in genera Haemobartonella a Eperythrozoon and reclassified newly into Genus Mycoplasma. New species: Mycoplasma haemosuis, M. wenyonii, M. (haemo)ovis, M.haemocanis, M.haemofelis, M. haemomurium . Genus: Ureaplasma (U. diversum – skot, U. canigenitalium, U. felinum) Genus: Acholeplasma (A. laidlawii)

Klasifikace mikroskopických hub 1. Houby nižší - Phycomycetes Class: Zygomycetes (houby spájivé) Family: Mucoraceae Genus: Mucor (M. racemosus) Genus: Rhizopus (R. cohnii - skot, R. microsporus - prase a skot) Genus. Absida (A. ramosa - skot a kůň) 2. Houby vyšší - Mycomycetes Class: Ascomycetes (houby vřeckaté) Family: Aspergillaceae Genus: Aspergillus (A. flavus; A. fumigatus A. niger) Genus: Penicillium Class: Deutromycetes (houby nedokonalé) Order: Moniliales Family: Dermatophytaceae Genus: Micosporum (M. canis, M. gypseum, M. equinum - pes, kočka, kůň) Genus: Trichophyton (T. verrucosum - skot, T. equinum - kůň (pes), T. mentagrophytes – pes a kočka) Family: Cryptococcaceae (kvasinkovité organismy) Genus: Candida (C. albcans - savci a ptáci) Genus: Cryptococcus (C. neoformans)