Supplemental Table Chry

GPLINK INDEL_ID TRACENAME GPLINK 34255 S156P6303911RG8.T0.scf GPLINK 34256 S156P6303911RG8.T0.scf GPLINK 42516 xby09c03.b1 GPLINK 53312 G33P634FC9.T0.scf GPLINK 54132 p3_7a199d01.p1cSCF GPLINK 57055 p1_3a434d01.q1cSCF GPLINK 60825 S149P661112RH4.T0.scf GPLINK 65219 p1_3a440h08.p1cSCF GPLINK 72925 jbw15d10.b1 GPLINK 72926 jbw15d10.b1 GPLINK 72927 jbw15d10.b1 GPLINK 79877 p4_7a117e05.p1cSCF GPLINK 79940 S146P612471RD10.T0.scf GPLINK 91762 S144P6426592FB12.T0.scf GPLINK 91882 jdt15g08.b1 GPLINK 91883 jdt15g08.b1 GPLINK 102609 S147P6180822RE7.T0.scf GPLINK 104913 S156P6310471RF9.T0.scf GPLINK 108650 p4_2a1042a03.p1cSCF GPLINK 108651 p4_2a1042a03.p1cSCF GPLINK 122726 S146P6120821RC3.T0.scf GPLINK 142672 xav53f08.g1 GPLINK 156097 S151P6456352FE7.T0.scf GPLINK 164416 S142P6120222FF4.T0.scf GPLINK 173563 jel09h08.b1 GPLINK 173564 jel09h08.b1 GPLINK 185789 xci21d02.g1 GPLINK 185790 xci21d02.g1 GPLINK 185791 xci21d02.g1 GPLINK 191134 S144P6426662RD3.T0.scf GPLINK 192689 efm03h02.b1 GPLINK 192950 fjh04b08.b1 GPLINK 646448 jei34f10.b1 GPLINK 4401 20SNP45080-710h01.q1c GPLINK 5602 20SNP45079-130g06.q1c GPLINK 5724 20SNP45081-566g08.q1c GPLINK 5725 20SNP45081-566g08.q1c GPLINK 5726 20SNP45081-566g08.q1c GPLINK 19914 20SNP45079-294e02.p1c GPLINK 26602 20SNP44340-734b07.q1c GPLINK 644712 20SNP45081-566g08.q1c GPLINK 199064 S228P7136RE11.T0 GPLINK 200386 S228P7529RB1.T0 GPLINK 200387 S228P7529RB1.T0 GPLINK 200780 S228P7330FF3.T0 GPLINK 201654 S228P765FC6.T0 GPLINK 203367 S228P7474RC4.T0 GPLINK 203798 S228P7253FD11.T0 GPLINK 207211 S228P7194RH10.T0 GPLINK 213176 S228P7507RE6.T0 GPLINK 214030 S228P7246RA11.T0

PATH CHR TSTART TSTOP START STOP 0a/91 chrY 52 55 57341531 57341531 0a/91 chrY 157 157 57341632 57341634 16/a4 chrY 150 150 10580757 10580758 27/20 chrY 191 191 57341342 57341348 28/4e chrY 114 114 10391703 10391703 2c/a3 chrY 114 114 19749390 19749393 32/66 chrY 413 418 17747565 17747565 39/4e chrY 189 189 19749398 19749401 44/c6 chrY 59 59 22237007 22237008 44/c6 chrY 103 103 22237053 22237053 44/c6 chrY 132 132 22237081 22237082 4f/4a chrY 332 333 10581988 10581988 4f/87 chrY 177 184 10117414 10117414 61/36 chrY 66 66 10631239 10631239 61/86 chrY 268 268 9254643 9254644 61/86 chrY 156 156 9254757 9254758 71/b4 chrY 313 318 57341876 57341876 75/3e chrY 252 252 17573015 17573017 7b/34 chrY 176 176 22099790 22099792 7b/34 chrY 66 67 22099902 22099902 8f/e9 chrY 276 277 15884932 15884932 ad/0c chrY 113 116 17810425 17810425 c1/28 chrY 266 268 57352399 57352399 cd/ec chrY 193 193 21276948 21276948 db/c3 chrY 202 207 22703195 22703195 db/c3 chrY 316 316 22703303 22703308 ee/4f chrY 53 56 10612821 10612821 ee/4f chrY 68 68 10612832 10612833 ee/4f chrY 177 177 10612943 10612947 f6/8f chrY 168 168 10111973 10111974 f9/05 chrY 224 224 7506521 7506521 f9/6d chrY 96 96 8276314 8276321 04/d5 chrY 212 268 57341069 57341069 28/e9 chrY 91 98 10578672 10578672 34/ff chrY 90 90 10578341 10578341 36/17 chrY 287 287 10612658 10612660 36/17 chrY 280 281 10612667 10612667 36/17 chrY 131 131 10612815 10612815 ba/6c chrY 67 67 10577522 10577523 fa/2e chrY 64 64 10612944 10612947 36/17 chrY 98 113 10612832 10612832 00/cd chrY 115 116 15212245 15212245 01/9b chrY 215 215 16254194 16254195 01/9b chrY 221 221 16254202 16254205 01/c1 chrY 164 164 15830771 15830771 Feb-51 chrY 387 387 9136329 9136332 29-Mar chrY 459 459 13319863 13319864 03/9e chrY 73 74 15468474 15468474 May-70 chrY 319 320 9180039 9180039 08/cb chrY 395 396 10052099 10052099 09/6d chrY 241 241 9233387 9233389

GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK

219546 S228P7276FG7.T0 220440 S228P775FE11.T0 223225 S213P600933RD12.T0 223931 S228P7324FH5.T0 224773 S228P750RE7.T0 226081 S228P7195RG11.T0 226516 S228P7429FE9.T0 233716 S228P7356FA7.T0 233717 S228P7356FA7.T0 234770 G248P88932RF6.T0 234771 G248P88932RF6.T0 237164 S228P7264RE11.T0 238444 S228P7209FE1.T0 238881 S228P7501FD9.T0 240105 S228P7137FB10.T0 240106 S228P7439RF3.T0 240201 S249P7147RE9.T0 240578 S228P7275RD6.T0 243547 S228P7261FH7.T0 246635 S228P7331FF1.T0 247047 S228P743RB12.T0 250051 S228P7337FH9.T0 250896 S228P7462RF2.T0 250897 S228P7462RF2.T0 250898 S228P7462RF2.T0 258224 S228P7323FG7.T0 258667 S228P7403FG3.T0 261181 S228P762RG1.T0 261609 S228P7156FG7.T0 263033 S213P600773RE7.T0 268977 S228P7423FB7.T0 270278 S228P7488RC2.T0 270279 S228P7488RC2.T0 275003 S213P600289FC8.T0 275233 S228P7236FD3.T0 275234 S228P7236FD3.T0 275235 S228P7400FF3.T0 283371 G248P800490RG7.T0 283372 G248P800490RG7.T0 283373 G248P800490RG7.T0 288562 S228P7239RA6.T0 288563 S228P7460FB8.T0 291389 S213P61377FA9.T0 291974 S228P7460FG1.T0 292400 S228P7317RF4.T0 293049 S213P61346RE3.T0 294068 S228P7273RB10.T0 295305 S228P7496FF7.T0 296183 S228P7407RB2.T0 297901 S228P7483FB1.T0 298766 S228P7318RD3.T0 300406 S228P7153RE3.T0

0c/a2 0c/e4 0e/94 0f/0b 0f/78 10/1c 10/7b 14/94 14/94 15/3a 15/3a 16/96 17/21 17/86 18/42 18/1d 18/1f 18/57 1a/1d 1b/ba 1c/21 1d/be 1e/5a 1e/5a 1e/5a 22/6c 22/b3 23/fb 24/5b 25/35 28/a9 29/5d 29/5d 2c/51 2c/63 2c/63 2c/59 31/20 31/20 31/20 34/15 34/23 35/bd 36/07 36/44 36/c7 37/59 37/ea 38/89 39/8e 39/e2 3a/d8

chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY

289 261 45 49 515 197 317 371 257 54 233 292 213 201 309 355 252 478 375 391 173 83 272 252 244 257 462 194 32 281 391 562 533 193 225 251 235 71 162 272 181 71 116 228 320 292 439 177 346 321 51 157

289 261 48 52 515 200 318 374 264 54 233 292 216 201 309 355 252 479 377 391 173 85 277 255 245 262 462 194 32 281 400 565 536 193 225 251 237 76 162 272 181 72 119 228 320 292 439 180 346 324 56 157

14350187 17026869 17784574 9934202 20008620 22755142 15468471 9934124 9934230 7054325 7054505 19506284 15720107 14187717 15156766 2737797 57341622 8925293 17861101 16375064 9933711 17861093 14369070 14369086 14369092 9934113 21610471 9933701 15552841 16852523 19203534 16587729 16587754 9956684 6173626 6173660 9284588 57352723 57352808 57352920 7448382 19800397 57352720 10416793 13786344 7246849 20105807 19192994 6996564 15879915 9934201 21300548

14350187 17026869 17784574 9934202 20008624 22755142 15468471 9934124 9934230 7054325 7054505 19506287 15720107 14187717 15156766 2737798 57341625 8925293 17861101 16375065 9933711 17861093 14369070 14369086 14369092 9934113 21610474 9933701 15552844 16852526 19203534 16587729 16587754 9956684 6173633 6173663 9284588 57352723 57352809 57352920 7448385 19800397 57352720 10416794 13786348 7246850 20105808 19192994 6996565 15879915 9934201 21300549

GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK

303654 S213P68663FG1.T0 305302 S213P69200FH1.T0 305391 S228P7375FE5.T0 309966 S228P7410FF2.T0 312984 S228P785FA8.T0 313364 S228P734RE1.T0 315196 G248P86330RD10.T0 315197 G248P86330RD10.T0 315198 G248P86330RD10.T0 315199 G248P86330RD10.T0 324096 S228P7104FA1.T0 324097 S228P7160RA7.T0 325844 S228P7225RE4.T0 327524 S228P732FC7.T0 327920 S228P7422FA2.T0 330108 S228P7162FE10.T0 331800 S228P7394RF2.T0 332219 S228P774FB9.T0 334278 S228P7285FG2.T0 335559 S228P7333FE2.T0 335991 S228P7117RA8.T0 337734 S228P7205RB1.T0 339478 S228P7415RF12.T0 340601 S213P65798FE1.T0 340955 S213P605160FF1.T0 344201 S228P7258FE10.T0 351305 S228P7183RE12.T0 352546 S228P7131FF10.T0 354685 S228P7540FA12.T0 354686 S228P754FA1.T0 355126 S228P7469FA6.T0 363168 S228P7124RG1.T0 367013 S228P7161RA8.T0 367014 S228P7161RA8.T0 367015 S228P7161RA8.T0 370919 S228P7147FE3.T0 371331 S228P7197RA8.T0 371332 S228P7197RA8.T0 373037 S228P712FE2.T0 376101 S228P798FE2.T0 378230 S228P7236RB12.T0 378231 S228P7236RB12.T0 378232 S228P7236RB12.T0 379926 S228P756FE11.T0 381988 S228P7195RF8.T0 382905 S228P7110RG3.T0 383703 S228P7237RA6.T0 384546 S228P7393RD10.T0 384547 S228P7393RD10.T0 385368 S228P7378RB9.T0 385800 S228P794FH11.T0 387244 S213P602985RB5.T0

3c/b7 3d/be 3d/cd 40/5c 42/35 42/62 43/ac 43/ac 43/ac 43/ac 48/8f 48/7b 49/89 4a/57 4a/bf 4b/bb 4c/df 4c/fc 4e/59 4f/18 4f/53 50/1f 51/15 51/e8 52/21 53/d7 57/ec 58/aa 5a/03 59/e1 5a/2d 5e/df 60/eb 60/eb 60/eb 63/07 63/6e 63/6e 64/3d 66/0b 67/60 67/60 67/60 68/4e 69/67 6a/0e 6a/7c 6a/ff 6a/ff 6b/54 6b/bc 6c/7f

chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY

221 176 430 496 89 354 185 180 101 77 201 439 257 121 490 561 71 454 425 394 102 139 32 408 71 61 161 216 187 326 398 243 189 224 297 491 390 137 357 442 103 87 77 125 292 156 221 9 47 80 135 265

221 176 433 497 92 354 185 180 104 82 201 439 257 121 491 561 71 455 425 394 102 139 32 408 71 61 166 219 187 329 399 244 189 224 297 491 390 144 358 442 106 88 84 125 294 156 221 9 50 84 136 265

17157026 57341342 12520785 19850511 15720108 3784282 57368604 57368616 57368696 57368714 21610421 19776771 15022042 21610420 4157852 7547213 8224546 15148895 12818819 22068527 17645066 15298915 27155807 10416802 7073837 13526741 17198418 21315712 7950890 17850196 16434259 17534888 9254608 9254647 9254722 8509296 14680551 14680798 9954453 6996597 15519417 15519431 15519433 7598158 8774305 13319854 7448384 10367762 10367804 8456404 15681118 57341345

17157029 57341345 12520785 19850511 15720108 3784282 57368610 57368619 57368696 57368714 21610424 19776772 15022045 21610423 4157852 7547214 8224547 15148895 12818823 22068528 17645067 15298919 27155811 10416803 7073838 13526741 17198418 21315712 7950890 17850196 16434259 17534888 9254611 9254648 9254723 8509299 14680551 14680798 9954453 6996598 15519417 15519431 15519433 7598165 8774305 13319855 7448387 10367765 10367804 8456404 15681118 57341349

GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK

387246 S213P602985RB5.T0 387490 S228P7342FH2.T0 390055 S228P7370FA3.T0 391291 S228P7123RH4.T0 391292 S228P7123RH4.T0 393823 S228P725RE5.T0 396355 S228P734FF2.T0 398971 S228P7439FF3.T0 401074 S228P7211RA1.T0 407771 S228P7521FH6.T0 407887 G248P83221FC9.T0 409080 S228P7541FA8.T0 409081 S228P7541FA8.T0 412047 S228P776RB2.T0 412864 S228P7343RA2.T0 415016 S228P7274FA5.T0 416690 S228P7258RD12.T0 422201 S228P6000RC12.T0 422652 S228P7313RD7.T0 424321 S228P7367FA6.T0 424322 S228P7367FA6.T0 433719 S228P7189FF9.T0 434877 S213P68316RC11.T0 435377 S228P7172RH10.T0 436258 S228P7422RH2.T0 440951 S228P7467FE9.T0 442082 S213P66873RF8.T0 449370 S228P7445FD12.T0 449371 S228P7445FD12.T0 451802 S228P7206RB6.T0 452564 S228P7464FE9.T0 454574 S228P7196FH11.T0 454657 S249P7143RF8.T0 454658 S249P7143RF8.T0 454659 S249P7143RF8.T0 455045 S228P7133FB3.T0 457467 S213P603202FG5.T0 458933 S227P7745RG2.T0 459347 S228P7227RC10.T0 459349 S228P7227RC10.T0 461450 S228P7273RH3.T0 466613 S228P7408RC1.T0 473895 S228P7217FG10.T0 476877 S228P7199FG12.T0 481601 S228P7226FG6.T0 482451 S228P754FD6.T0 484589 S228P7230FB1.T0 485838 S228P7229RH10.T0 486478 S213P64832FC7.T0 486479 S213P64832FC7.T0 486480 S213P64832FC7.T0 491053 S228P7105RC6.T0

6c/7f chrY 6c/ae chrY 6e/18 chrY 6e/d2 chrY 6e/d2 chrY 70/37 chrY 71/a3 chrY 73/49 chrY 74/49 chrY 78/4e chrY 78/81 chrY 79/1b chrY 79/1b chrY 7a/b0 chrY 7b/2c chrY 7c/75 chrY 7d/56 chrY 80/70 chrY 80/bf chrY 81/c0 chrY 81/c0 chrY 87/14 chrY 87/ed chrY 88/18 chrY 88/7e chrY 8b/2a chrY 8b/df chrY 90/01 chrY 90/01 chrY 91/75 chrY 91/fb chrY 93/3e chrY 93/35 chrY 93/35 chrY 93/35 chrY 93/86 chrY 94/ed chrY 95/a3 chrY 96/00 chrY 96/00 chrY 97/27 chrY 99/f8 chrY 9e/04 chrY 9f/ef chrY B2Nov-46 chrY B25-Apr chrY B2Nov-19 chrY B25-Jun chrY a5/6d chrY a5/6d chrY a5/6d chrY a7/e0 chrY

196 113 80 164 160 148 400 364 81 284 178 135 57 437 175 162 368 35 220 461 488 281 221 240 281 363 81 263 357 249 253 384 289 410 538 255 326 177 265 285 317 83 400 188 178 377 203 362 335 327 254 534

196 113 80 164 160 148 400 364 81 284 178 136 57 438 176 167 369 44 220 461 488 283 224 240 281 374 81 268 360 249 257 387 289 410 539 258 328 180 268 287 317 83 403 188 178 382 204 362 335 328 255 534

57341420 15852475 19506316 17757993 17758001 20079685 13320436 2737816 20972990 22860292 57341345 8524412 8524489 17534906 9954430 9113494 16636525 9934120 15065866 9964829 9964860 15702975 8693450 12465707 8791058 10499899 20154667 9934105 9934193 16994688 27145322 16831107 57341621 57341746 57341876 10473498 13744021 57341876 10357686 10357701 12465692 15247504 15879966 16444841 13142544 16279495 15681121 6938409 10612656 10612666 10612737 16000122

57341421 15852477 19506319 17757996 17758008 20079685 13320437 2737817 20972993 22860293 57341345 8524412 8524495 17534906 9954430 9113494 16636525 9934120 15065867 9964832 9964869 15702975 8693450 12465714 8791059 10499899 20154672 9934105 9934193 16994689 27145322 16831107 57341624 57341747 57341876 10473498 13744021 57341876 10357686 10357701 12465699 15247507 15879966 16444843 13142546 16279495 15681121 6938409 10612658 10612666 10612737 16000122

GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK

493580 S228P7501RA11.T0 496291 S213P601564RE6.T0 497170 S213P604876FA5.T0 497391 S228P7165FH5.T0 497393 S228P7165FH5.T0 497394 S228P7165FH5.T0 500313 S228P7172RB12.T0 503667 S228P7236FC3.T0 503668 S228P7236FC3.T0 506209 S228P7342FC8.T0 507060 S228P7198RA8.T0 509058 S213P64677FB4.T0 512301 S213P602880FD2.T0 512302 S213P602880FD2.T0 513907 G248P801090FB4.T0 515796 S213P65007FA7.T0 521049 S228P7132RA6.T0 521468 S228P7146FB1.T0 522285 S228P72RE2.T0 522286 S228P7401FC10.T0 523556 S228P7135FF6.T0 527801 S228P7459FA12.T0 528227 S228P7385FE5.T0 528228 S228P7385FE5.T0 528230 S228P7385FE5.T0 528231 S228P7385FE5.T0 528232 S228P7385FE5.T0 529121 S228P767RE5.T0 533202 S213P61690RG6.T0 533203 S213P61690RG6.T0 535086 S228P713FF1.T0 535486 S228P7192RA7.T0 539272 S228P7338FA7.T0 541390 S228P779FF8.T0 543808 S228P7311FH5.T0 544230 S228P7509FD6.T0 549737 S228P7478FD6.T0 549738 S228P7478FD6.T0 552322 S226P7192RH2.T0 552339 S228P76RG5.T0 553618 S228P6003FE4.T0 558763 S228P7286RA11.T0 561616 G248P85835RH5.T0 563258 S228P7147RC8.T0 563259 S228P7147RC8.T0 563988 S213P69772RG11.T0 564932 S228P7338FB8.T0 567903 S228P7122RD12.T0 568286 S228P7144FD8.T0 569836 S213P65914FA11.T0 575283 S213P605113FH2.T0 577155 S228P7431RD9.T0

B2May-17 chrY ab/00 chrY ab/7a chrY ab/95 chrY ab/95 chrY ab/95 chrY ad/48 chrY af/23 chrY af/23 chrY b0/87 chrY b1/03 chrY b2/2d chrY b4/22 chrY b4/22 chrY b5/2f chrY b6/16 chrY b9/0a chrY b9/46 chrY b9/d0 chrY b9/da chrY ba/9a chrY bd/0f chrY bd/2d chrY bd/2d chrY bd/2d chrY bd/2d chrY bd/2d chrY bd/c3 chrY c0/2d chrY c0/2d chrY c1/0e chrY c1/3a chrY c3/78 chrY c4/9d chrY c6/49 chrY c6/75 chrY c9/ac chrY c9/ac chrY cb/1b chrY cb/09 chrY cb/b2 chrY ce/bc chrY d0/5f chrY d1/06 chrY d1/06 chrY d1/9e chrY d2/2b chrY d3/bb chrY d4/01 chrY d5/1e chrY d8/23 chrY d9/14 chrY

279 113 306 74 96 143 95 358 357 120 137 49 518 412 522 468 219 39 56 220 380 91 380 374 362 356 347 216 148 139 161 165 167 259 271 459 155 142 272 70 628 408 26 111 91 392 331 75 207 43 96 136

279 113 309 74 98 144 99 358 357 120 144 52 518 413 522 471 219 44 65 220 381 92 380 374 362 356 347 216 148 139 168 168 168 264 272 459 162 144 272 70 631 411 28 114 100 393 332 76 208 44 97 144

7118618 17020082 17850046 16684492 16684517 16684561 12308604 9254632 9254636 19908391 14680796 19705180 7057299 7057409 57341333 12422284 8564852 14782538 19036703 20105799 19450923 19450899 17856704 17856712 17856727 17856736 17856747 9992014 16708391 16708405 21533504 9934115 6389476 6173554 20576819 16994717 6269385 6269395 57341876 13960675 7431712 17157072 57340982 16488208 16488218 10612737 9084321 19800413 20576844 9961699 57341531 8469749

7118618 17020085 17850046 16684493 16684517 16684561 12308604 9254634 9254636 19908394 14680796 19705180 7057303 7057409 57341338 12422284 8564852 14782538 19036703 20105800 19450923 19450899 17856705 17856713 17856729 17856737 17856748 9992014 16708395 16708413 21533504 9934115 6389476 6173554 20576819 16994718 6269385 6269395 57341878 13960678 7431712 17157072 57340982 16488208 16488218 10612737 9084321 19800413 20576844 9961699 57341531 8469749

GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK GPLINK

580168 S228P7107FF11.T0 580393 S213P61649FB10.T0 580977 S228P7458FB7.T0 588147 S228P7255RE9.T0 588148 S228P7255RE9.T0 588149 S228P7255RE9.T0 588150 S228P7255RE9.T0 590964 S213P61340RD1.T0 591620 S228P7438RG9.T0 593334 S228P7521RF10.T0 597880 S228P7330FG2.T0 599610 S228P7247RB7.T0 599611 S228P7247RB7.T0 599612 S228P7247RB7.T0 599613 S228P7247RB7.T0 599933 S213P67722FG12.T0 600468 S228P7234RG12.T0 600469 S228P7234RG12.T0 600470 S228P7234RG12.T0 601325 S228P7185FF9.T0 606964 S213P602615FH11.T0 606965 S213P602615FH11.T0 608466 S228P7146FC10.T0 614724 S228P7390RB3.T0 615515 S228P7150RB4.T0 616442 S228P778FE1.T0 618927 S228P7187FD12.T0 621214 S249P7251RE11.T0 626574 S228P7357RD7.T0 626575 S228P7426RG3.T0 627394 S228P7338FH2.T0 627816 S228P7226RB12.T0 627817 S228P7235RH8.T0 628212 S228P7395FB2.T0 629848 S228P7164RB3.T0 637891 S228P7461RG6.T0 638707 S228P7144FG2.T0 641436 S213P6240RD5.T0 641437 S213P6240RD5.T0 641438 S213P6240RD5.T0 643744 S228P7126FH5.T0 644033 S213P65353FB8.T0 657933 S228P7471RC4.T0 663838 S228P720RB8.T0 665140 S227P7831FD3.T0 666401 S228P7400FG5.T0 669360 S228P734RA5.T0 671089 S228P7158RE5.T0 672220 S228P7213RE4.T0 672388 S228P7370RD2.T0 678809 S228P7240RC5.T0 681020 G248P801034FD9.T0

da/c9 db/32 db/72 df/80 df/80 df/80 df/80 e1/16 e1/84 e2/4f e5/14 e6/29 e6/29 e6/29 e6/29 e6/6e e6/84 e6/84 e6/84 e7/12 ea/65 ea/65 eb/13 ee/bb ef/3b ef/c6 f1/52 f2/7e f5/a1 f5/b1 f6/03 f6/3e f6/65 f6/ac f7/a6 fc/4a fc/c5 fe/7a fe/7a fe/7a ff/8d ff/b7 08/dd 3d/93 49/66 54/bb 6f/07 7f/26 89/7b 8a/f4 c4/eb d8/fa

chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY

193 371 518 215 188 146 132 246 90 88 241 187 189 206 294 293 226 248 266 337 188 161 139 200 287 251 290 210 288 435 73 68 368 258 215 44 54 290 168 164 453 281 66 118 147 227 217 31 329 403 460 532

200 371 520 220 188 146 132 246 90 88 244 188 189 209 294 293 235 249 267 344 188 161 140 200 292 252 290 210 292 436 73 68 369 261 216 44 61 294 168 168 454 281 66 118 147 227 217 31 329 403 460 532

14680768 57341885 9970723 9934124 9934150 9934193 9934217 57341876 9962887 22860309 9934201 15965467 15965467 15965486 15965570 10612953 15519358 15519370 15519386 17938733 19774311 19774341 17534896 7548938 6163614 16694844 11232944 57368619 27145333 12705043 15852477 20434415 20576808 7120257 19450896 9203704 7875532 12249861 12249982 12249987 6173555 16831368 57193936 57190244 12402581 27155760 27155797 57193788 7575665 57194538 8227687 57341340

14680768 57341886 9970723 9934124 9934150 9934202 9934220 57341877 9962887 22860310 9934201 15965467 15965468 15965486 15965571 10612955 15519358 15519370 15519386 17938733 19774313 19774342 17534896 7548945 6163614 16694844 11232948 57368626 27145333 12705043 15852479 20434417 20576808 7120257 19450896 9203705 7875532 12249861 12249986 12249987 6173555 16831371 57193950 57193802 12402610 27155774 27155821 57193802 7575682 57198096 8227704 57341345

GPLINK GPLINK GPLINK GPLINK

681971 S228P7331RE9.T0 682418 S228P7266FD6.T0 683919 S249P7251RE11.T0 684489 S228P7143FA9.T0

e1/96 e5/25 f2/7e f7/71

chrY chrY chrY chrY

348 520 84 450

348 539 123 450

27155760 20878698 57368714 19958084

27155784 20878698 57368714 19958108

IS_REVERSE LEN DOUBLE_HIT N 4Y N 3N N 2N N 7Y N 1Y N 4Y N 6Y N 4Y N 2Y N 1Y N 2Y N 2N Y 8N Y 1Y Y 2N Y 2N N 6Y Y 3N Y 3N Y 2N Y 2N N 4Y Y 3Y N 1Y N 6N N 6N N 4N N 2N N 5N Y 2Y Y 1Y Y 8Y N 57 N Y 8Y N 1Y Y 3N Y 2Y Y 1Y Y 2N Y 4N Y 16 N N 2N N 2N N 4Y N 1Y Y 4N Y 2Y N 2N N 2N N 2N N 3N

REF_TYPE INS DEL DEL DEL INS DEL INS DEL DEL INS DEL INS INS INS DEL DEL INS DEL DEL INS INS INS INS INS INS DEL INS DEL DEL DEL INS DEL INS INS DEL DEL INS INS DEL DEL INS INS DEL DEL DEL DEL DEL INS INS INS DEL

CHIMP_TYPE T T T T T T T T T T T T T INS T T T T T T T T T DEL T T T T T T DEL T T DEL T T T T T T T T T T T T T T T U T

CELERA_TYPE T T T T DEL INS DEL INS INS DEL INS T U T T T T U U INS INS DEL T INS INS U T T T INS INS INS T T T T T T T T T INS U INS DEL U INS INS INS INS T

C_CHR C_START U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 chrY 9677987 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 chrY 22343738 U 0 U 0 U 0 U 0 U 0 U 0 chrY 24142119 U 0 U 0 chr1 5541636 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 chrY 24051790 U 0

N N N N N N N Y Y N N N Y N Y N N Y Y N N Y Y Y Y Y Y Y Y N N Y Y N N N Y N N N N N Y Y Y N Y N N N N N

1Y 1Y 4N 4N 5Y 4N 2Y 4Y 8Y 1Y 1Y 4N 4N 1Y 1Y 2N 4N 2N 3N 2N 1Y 3N 6Y 4N 2Y 6N 4N 1Y 4N 4N 10 N 4N 4N 1Y 8N 4Y 3N 6Y 2Y 1Y 4Y 2N 4N 2N 5Y 2N 2N 4Y 2N 4N 6N 2N

INS DEL INS INS DEL INS INS INS INS DEL INS DEL INS DEL DEL DEL DEL INS INS DEL DEL INS INS INS INS INS DEL DEL DEL DEL INS INS INS INS DEL DEL INS INS DEL INS DEL INS INS DEL DEL DEL DEL INS DEL INS INS DEL

DEL T T U T U T U DEL T T T T INS T DEL T T T U INS T DEL U DEL U T U T T T T T U U INS U DEL U DEL INS T T T DEL DEL U T U T U U

INS DEL T U INS INS INS T T T T U INS DEL U T T INS INS U DEL INS INS INS INS U U U U U INS INS INS DEL U U T T T T INS INS T U U U U DEL U INS U U

chrY U U chrY U chrY U chrY chrY U U U U chrY U chrY U U U chrY chrY U chrY chrY chrY chrY U chrY U U U U U chrY chrY chrY chrY chr8 chr8 chr8 chrY U U U chrY chrY chrY U chrY U chrY chrY

15010520 0 0 6053819 0 24096212 0 6053580 6053836 0 0 0 0 14819072 0 2378410 0 0 0 17041389 6053236 0 15031640 15031620 15031612 6053721 0 6053207 0 0 0 0 0 8925443 6053656 6053655 8954565 130116011 130116102 130116212 7346204 0 0 0 14373673 7157750 20852182 0 6896486 0 6053814 22367402

N N N Y Y N Y Y Y Y N N N N Y N N N N Y N Y Y Y Y N Y Y N Y N N N N N N Y Y Y Y Y Y Y N N Y N N N N N Y

4N 4Y 4N 2N 4N 1Y 7N 4N 4Y 6N 4N 2N 4N 4N 2N 2N 2N 2N 5Y 2N 2N 5N 5N 2N 2N 1Y 6N 4N 1Y 4Y 2N 2N 4N 2N 2N 4N 1Y 8N 2N 2N 4N 2N 8N 8Y 3N 2Y 4Y 4N 4N 5N 2N 5N

DEL DEL INS INS INS DEL DEL DEL INS INS DEL DEL DEL DEL INS DEL DEL INS DEL DEL DEL DEL DEL DEL DEL DEL INS INS INS INS INS INS DEL DEL DEL DEL DEL INS INS DEL INS INS INS DEL INS DEL DEL DEL INS INS INS DEL

T T T T T T U U DEL INS T T T T T T T T T T T U T T T INS T T T T T T U U U T T T U T T T T T T INS INS T T T T T

U T INS INS INS DEL T T T T U U U U INS U U INS INS U U U T U T INS INS INS INS INS INS INS T T T T U INS T U INS INS INS U INS INS INS U INS INS INS T

U U U U U U chr8 chr8 chr8 chr8 U U U U U U U U U U U chrY U U U chrY U U U U U U chrY chrY chrY U U U chrY U U U U U U chrY chrY U U U U U

0 0 0 0 0 0 130099638 130099633 130099554 130099530 0 0 0 0 0 0 0 0 0 0 0 16015868 0 0 0 14088592 0 0 0 0 0 0 6053576 6053576 6053576 0 0 0 6053668 0 0 0 0 0 0 13879589 7346170 0 0 0 0 0

Y N Y Y Y Y Y Y N N Y Y Y Y N N N Y Y N N N Y Y N Y N N N N N N N N N N Y Y N N N Y Y Y Y Y N Y Y Y Y N

2N 3N 4N 4N 8N 1Y 2Y 2N 4N 2N 1Y 2N 7N 2N 2N 6N 2N 10 N 2N 4N 10 N 3Y 4N 8N 2N 12 Y 6N 6N 4Y 2N 5N 4N 4N 2Y 2Y 4N 3N 4N 4N 3N 8N 4N 4N 3N 3N 6Y 2N 1Y 3N 2N 2N 1Y

DEL DEL DEL DEL DEL DEL DEL DEL DEL DEL DEL INS DEL INS INS INS INS INS DEL DEL DEL INS INS DEL DEL INS DEL INS INS DEL INS INS DEL DEL INS INS INS INS INS INS DEL DEL INS DEL DEL INS INS DEL DEL INS INS DEL

T T T T T INS INS DEL T T T T T T U T T U T U U T T T T DEL U U U T T T T T T T T T T T T T T T T T T INS T T T T

T U U U U U INS T U U T INS U INS T INS INS T U T T INS U U U INS U T T U T INS T T T INS U T INS INS U U INS U U INS INS INS T T T DEL

U U U U U chrY chrY chrY U U U U U U chrY U U chrY U chrY chrY U U U U chrY chrY chrY chrY U U U U U U U U U U U U U U U U U U chrY U U U U

0 0 0 0 0 20825144 13880609 2378622 0 0 0 0 0 0 6053596 0 0 6053455 0 8944539 8944539 0 0 0 0 9540211 20903069 6053805 6053899 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6827895 0 0 0 0

Y N N N N N Y Y Y Y Y N Y Y N N N Y N Y Y N Y Y Y Y Y Y Y Y N Y Y Y N Y Y Y Y N N Y Y Y Y Y Y Y Y Y N N

1Y 4N 4N 2N 3N 2N 5N 3Y 1Y 4N 8N 4N 5N 2N 6N 4Y 1Y 6N 10 N 2Y 2N 2N 2N 2N 3N 2N 2N 1Y 5N 9N 8Y 4Y 2Y 6N 2Y 2N 8N 3N 3N 4N 4Y 4N 3N 4N 10 N 2N 2N 2N 2N 2N 2N 9N

DEL DEL INS DEL INS INS INS DEL DEL DEL INS INS DEL INS DEL INS DEL INS INS DEL INS INS DEL DEL DEL DEL DEL INS DEL DEL INS INS INS INS INS DEL INS INS DEL DEL INS INS INS INS INS INS INS INS INS INS INS INS

INS T T T T T T U U U T T T T T DEL T T T INS T T T T T T T T T T T DEL U U DEL T T T T T DEL T T T T T T T U T T T

U U INS U INS INS INS T T U INS INS T T T INS DEL INS INS U INS INS U U U U U U U U INS U DEL U INS U U U T U INS INS T INS INS T T INS INS U T INS

chrY U U U U U U chrY chrY chrY U U U U U chrY U U U chrY U U U U U U U U U U U chrY chrY chrY chrY U U U U U chrY U U U U U U U chrY U U U

7028349 0 0 0 0 0 0 6053638 6053638 20649363 0 0 0 0 0 12887193 0 0 0 20851410 0 0 0 0 0 0 0 0 0 0 0 6053426 24078971 6053659 21617467 0 0 0 0 0 7329486 0 0 0 0 0 0 0 21617326 0 0 0

N Y N Y Y Y Y Y N Y N N N N N Y N N N N Y Y Y Y Y N Y Y Y N N Y N Y N Y N Y Y Y Y N N N Y N Y N Y N Y N

8N 2N 3N 6N 1Y 10 N 4Y 2N 1Y 2N 4N 2N 2N 4N 2N 3N 10 N 2N 2N 8N 3Y 2N 2N 8N 6N 2N 5N 8Y 5N 2Y 3N 3N 2Y 4Y 2N 2N 8N 5N 5N 5N 2N 4N 15 N 3559 N 30 N 15 N 25 Y 15 Y 18 N 3559 N 18 Y 6N

INS DEL INS INS DEL DEL DEL DEL INS DEL INS INS DEL INS DEL DEL INS INS INS INS DEL DEL INS DEL INS INS DEL DEL INS INS DEL DEL INS INS INS DEL INS INS DEL INS INS DEL DEL DEL DEL DEL DEL DEL DEL DEL DEL DEL

T T T U INS U INS T DEL T U T T T T T T T T T T T T DEL U T T INS T DEL T T DEL DEL T U T T T T U T T T T T T T U T T T

INS T INS T T T T T T U T INS U INS U T INS INS INS INS INS U INS T T INS U T T INS U U INS U INS U INS INS U INS U T T T T T T T U T INS T

U U U chrY chrY chrY chrY U chrY U chrY U U U U U U U U U U U U chrY chrY U U chr8 U chrY U U chrY chrY U chrY U U U U chrY U U U U U U U chrY U U U

0 0 0 6053664 6053449 6053595 6053449 0 8953739 0 6053626 0 0 0 0 0 0 0 0 0 0 0 0 24096427 8944775 0 0 130099405 0 13203654 0 0 21617453 7029920 0 8912592 0 0 0 0 6053743 0 0 0 0 0 0 0 24067997 0 0 0

Y N Y Y

25 N 20 N 40 N 25 N

DEL INS INS DEL

T U U T

T U T U

U chrY chr8 U

0 21941743 130099406 0

C_STOP

CELERA_CHR CELERA_START CELERA_STOP IS_REDUNDANT NUM_REDUNDANT 0U 0 0N 3 0U 0 0N 0 0U 0 0N 0 0U 0 0N 1 0 chrY 3136683 3136683 N 1 0 chrY 6412222 6412222 N 0 0 chrY 4662107 4662112 N 0 0 chrY 6412179 6412179 N 0 0 chrY 282107 282107 N 0 0 chrY 282151 282151 N 1 0 chrY 282180 282180 N 1 0U 0 0N 0 0 chrY 2861108 2861635 N 0 9677987 U 0 0N 8 0U 0 0N 0 0U 0 0N 0 0U 0 0N 1 0 chrY 4487659 4487659 N 0 0 chrY 8440986 8440986 N 0 0 chrY 8440876 8440877 N 0 0 chrX 4432876 4432877 N 0 0 chrY 4724976 4724979 N 0 0U 0 0N 1 22343738 chrY 7645774 7645774 N 0 0 chrY 9116752 9116757 N 0 0 chrY 9116866 9116866 N 0 0U 0 0N 0 0U 0 0N 0 0U 0 0N 0 0 chrY 2858639 2858639 N 0 24142119 chrY 1758247 1758247 N 0 0 chrY 988780 988780 N 0 0U 0 0N 0 5541643 U 0 0N 5 0U 0 0N 1 0U 0 0N 0 0U 0 0N 1 0U 0 0N 2 0U 0 0N 0 0U 0 0N 0 0U 0 0N 0 0 chrX 3760058 3760059 N 0 0 chrX 4801992 4801992 N 0 0 chrX 4801998 4801998 N 0 0 chrX 4378577 4378577 N 1 0 chrY 137126 137126 N 0 0 chrX 1875335 1875335 N 0 0 chrX 4016287 4016288 N 0 0 chrY 93492 93493 N 0 24052417 chrY 3567833 3567834 N 0 0U 0 0N 0

15010520 chrX 0 chrY 0U 6054355 chrY 0 chrY 24096776 chrY 0 chrX 6054154 U 6053843 U 0U 0U 0 chrY 0 chrX 14819072 chrX 0 chrX 2378410 U 0U 0 chrY 0 chrY 17041389 chrX 6053236 chrY 0 chrY 15031645 chrX 15031623 chrX 15031613 chrX 6054033 chrY 0 chrY 6053207 chrY 0 chrX 0 chrX 0 chrY 0 chrX 0 chrX 8926141 chrY 6054178 chrY 6053655 chrY 8955124 U 130116016 U 130116102 U 130116212 U 7346204 chrY 0 chrY 0U 0 chrY 14373673 chrX 7157750 chrY 20852182 chrY 0 chrY 6896486 chrY 0 chrX 6054403 chrY 22367402 chrY

2894763 3941426 0 59017 6153424 9064712 4016284 0 0 0 0 6656923 4267775 2732292 3704798 0 0 339795 4775870 4922846 3489622 4775344 2913632 2913612 2913604 3490334 7968939 3489423 4100547 5403107 6946319 5138923 5138894 3492607 3490238 3490487 0 0 0 0 1811134 6361089 0 3161641 2330996 2013011 6055858 6935777 2263631 4427721 58969 7669374

2894763 N 3941426 N 0N 59553 N 6153424 N 9064715 N 4016285 N 0N 0N 0N 0N 6656923 N 4267778 N 2732292 N 3704798 N 0N 0N 339796 N 4775872 N 4922846 N 3489622 N 4775346 N 2913637 N 2913615 N 2913605 N 3490646 N 7968939 N 3489423 N 4100547 N 5403107 N 6946328 N 5138926 N 5138897 N 3492607 N 3490760 N 3490487 N 0N 0N 0N 0N 1811134 N 6361090 N 0N 3161641 N 2330996 N 2013011 N 6055858 N 6935780 N 2263631 N 4427724 N 59558 N 7669374 N

0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0

0 chrY 0U 0 chrX 0 chrY 0 chrX 0 chrX 130099638 U 130099633 U 130099557 U 130099535 U 0 chrY 0 chrY 0 chrX 0 chrY 0 chrX 0 chrY 0 chrY 0 chrX 0 chrX 0 chrY 0 chrY 16015868 chrX 0U 0 chrY 0U 14088592 chrX 0 chrY 0 chrY 0 chrY 0 chrY 0 chrX 0 chrY 6054110 U 6054110 U 6054110 U 0U 0 chrX 0 chrX 6054150 U 0 chrY 0 chrX 0 chrX 0 chrX 0 chrY 0 chrY 13879589 chrX 7346170 chrY 0 chrY 0 chrY 0 chrY 0 chrX 0U

4071587 0 1053969 6311150 4267590 90029448 0 0 0 0 7968520 6385193 3569854 7968519 90407061 9241909 1040467 3696708 1352006 8410111 4559617 3846751 0 3162018 0 2082065 4112908 7684541 1314056 4764935 4981657 4449443 0 0 0 0 3228623 3228370 0 2263456 4066981 4066965 4066955 1666589 490867 1874705 1811174 3112742 3112780 808280 4228928 0

4071587 N 0N 1053972 N 6311151 N 4267593 N 90029448 N 0N 0N 0N 0N 7968520 N 6385193 N 3569854 N 7968519 N 90407062 N 9241909 N 1040467 N 3696709 N 1352006 N 8410111 N 4559617 N 3846751 N 0N 3162018 N 0N 2082065 N 4112913 N 7684544 N 1314056 N 4764938 N 4981658 N 4449444 N 0N 0N 0N 0N 3228623 N 3228377 N 0N 2263456 N 4066984 N 4066966 N 4066962 N 1666589 N 490869 N 1874705 N 1811174 N 3112742 N 3112783 N 808284 N 4228929 N 0N

0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

0U 0 chrX 0 chrY 0 chrY 0 chrY 20825144 chrY 13880609 chrX 2378622 U 0 chrY 0 chrY 0U 0 chrY 0 chrY 0 chrY 6054168 U 0 chrY 0 chrX 6053863 U 0 chrX 8945182 U 8945182 U 0 chrX 0 chrY 0 chrX 0 chrY 9540222 chrY 20903069 chrY 6053810 U 6053902 U 0 chrY 0U 0 chrX 0U 0U 0U 0 chrY 0 chrX 0U 0 chrY 0 chrY 0 chrX 0 chrX 0 chrX 0 chrX 0 chrX 0 chrX 0 chrX 6827895 chrY 0U 0U 0U 0 chrX

0 4400281 6656885 4672309 4672305 6081983 1875881 0 7342321 8959721 0 740680 740602 4449803 0 159734 5187247 0 3613543 0 0 4250785 571636 998828 474111 3245074 6006575 0 0 3909245 0 5381691 0 0 0 3218480 2288564 0 3102666 3102686 998874 3794968 4428042 4991872 1697367 4827601 4228931 2321645 0 0 0 4547930

0N 4400281 N 6656885 N 4672309 N 4672305 N 6081983 N 1875881 N 0N 7342321 N 8959721 N 0N 740681 N 740602 N 4449804 N 0N 159739 N 5187248 N 0N 3613543 N 0N 0N 4250787 N 571639 N 998828 N 474111 N 3245085 N 6006575 N 0N 0N 3909245 N 0N 5381694 N 0N 0N 0N 3218483 N 2288566 N 0N 3102669 N 3102688 N 998874 N 3794968 N 4428045 N 4991872 N 1697367 N 4827606 N 4228932 N 2321645 N 0N 0N 0N 4547930 N

0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1

7028349 chrY 0 chrY 0 chrY 0 chrX 0 chrX 0 chrX 0 chrY 6054141 U 6054141 U 20649363 chrY 0 chrX 0 chrY 0U 0U 0U 12887196 chrX 0 chrY 0 chrX 0 chrY 20851410 chrY 0 chrY 0 chrY 0 chrY 0 chrY 0 chrY 0 chrY 0 chrY 0 chrY 0 chrX 0 chrX 0 chrY 6053429 chrY 24079625 chrY 6054053 chrY 21617468 chrY 0 chrY 0 chrY 0 chrY 0U 0 chrX 7329489 chrY 0 chrY 0U 0 chrX 0 chrX 0U 0U 0 chrY 21617327 chrY 0 chrY 0U 0 chrY

2141437 3934639 4764614 5235213 5235235 5235282 3762836 0 0 6253264 3228366 6456049 0 0 0 955469 700142 3329846 6779492 6055866 6712284 6712071 4771489 4771483 4771471 4771465 4771456 3507611 5258799 5258790 7905323 3489465 2861651 3490241 5584761 3909606 2992710 2992697 0 2505258 1828587 4071847 0 5038879 5038859 0 0 6361247 5584829 3497024 0 795100

2141437 N 3934639 N 4764617 N 5235213 N 5235237 N 5235283 N 3762840 N 0N 0N 6253264 N 3228373 N 6456052 N 0N 0N 0N 955472 N 700142 N 3329851 N 6779501 N 6055866 N 6712285 N 6712072 N 4771489 N 4771483 N 4771471 N 4771465 N 4771456 N 3507611 N 5258799 N 5258790 N 7905330 N 3490192 N 2861652 N 3490635 N 5584762 N 3909606 N 2992717 N 2992699 N 0N 2505258 N 1828590 N 4071850 N 0N 5038882 N 5038868 N 0N 0N 6361248 N 5584830 N 3497645 N 0N 795108 N

0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 chrX 0U 0 chrY 6053669 U 6053449 U 6053595 U 6053449 U 0U 8953739 U 0 chrY 6054111 U 0 chrX 0 chrX 0 chrX 0 chrX 0U 0 chrX 0 chrX 0 chrX 0 chrY 0 chrY 0 chrY 0 chrY 24096427 U 8945298 U 0 chrX 0 chrY 130099405 U 0U 13203655 chrX 0 chrX 0 chrY 21617454 chrY 7029923 chrY 0 chrY 8913111 chrY 0 chrY 0 chrY 0 chrY 0 chrY 6054248 chrY 0U 0U 0U 0U 0U 0U 0U 24068532 chrY 0U 0 chrY 0U

3228627 0 3486458 0 0 0 0 0 0 8959704 0 4513274 4513276 4513293 4513381 0 4067170 4067192 4067210 4853300 6387343 6387316 4449168 0 0 5245567 3696233 0 0 1238229 4400283 5727252 5585129 2139796 6712265 69908 1389010 3821594 3821472 3821468 3490325 0 0 0 0 0 0 0 1689081 0 1037389 0

3228634 N 0N 3486460 N 0N 0N 0N 0N 0N 0N 8959704 N 0N 4513275 N 4513276 N 4513296 N 4513381 N 0N 4067179 N 4067193 N 4067211 N 4853307 N 6387343 N 6387316 N 4449169 N 0N 0N 5245568 N 3696233 N 0N 0N 1238230 N 4400283 N 5727252 N 5585130 N 2139799 N 6712266 N 69908 N 1389017 N 3821598 N 3821472 N 3821472 N 3490830 N 0N 0N 0N 0N 0N 0N 0N 1689616 N 0N 1037389 N 0N

0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0

0U 21942310 chrY 130099890 U 0 chrY

0 7247506 0 6203103

0N 7248073 N 0N 6203660 N

0 0 0 0

REDUNDANT_IDS 251,239,305,303,329,000 U U 439009 118404 U U U U 634958 634959 U U 253,666,293,208,400,000,000,000,000,000,000,000,000,000,000,000 U U 251240 U U U U U 291388 U U U U U U U U U U 26,739,378,620,448,500,000,000,000,000 24950 U 563987 185,788,486,481 U U U U U U 270277 U U U U U U

U 357193 U U U U 384,127,612,190 597879 U 272549 272550 U U U 415,835,443,466 U U U U U U U U U U U U 375,650,405,268,550,000 U U U U U 491900 U U U 506730 506731 506732 U U U U 422203 U U U U U U U

U 464310 U U U 553620 U U U U U U U U U U U U U U U U U U U U U U 415832 425198 U U U U U U 507059 U U U U U U 455209 U U U U U U U U

U U U U U U U U U U 474411 U U U U U U U U U U 449774 U U U U U U 535487 U U U U 509097 509098 U U U U U U U U U U 577153 U 496101 U U U 633272

U U U U U U U 607195 607196 U U U U U U U 567905 U U U U U U U U U U 557505 U U 594945 572027 U U U U U U U U U U U U U U U U U U U U

U U U U U U U U 633764 U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U 685314 684957 U U U U

U U U U

REDUNDANT_TRACENAMES S213P68056RC6.T0,S213P69200FH1.T0,G248P88927FD9.T0 U U S213P60117FG10.T0 p3_7a550e06.q1cSCF U U U U S228P7534RC1.T0 S228P7534RC1.T0 U U S249P7229FH7.T0,S226P796RA4.T0,S226P7933RE12.T0,S226P7579RE3.T0,S249P7205FA3.T0,G248P802295RA10.T0,S2 U U S213P68056RC6.T0 U U U U U S213P61377FA9.T0 U U U U U U U U U U Chr_20-47841351g12.q1k,S226P71209FD3.T0,S226P762FD4.T0,S213P62339RF7.T0,S249P7601RA10.T0 20SNP45079-148a06.q1c U S213P69772RG11.T0 xci21d02.g1,S213P64832FC7.T0 U U U U U U S228P7329FF3.T0 U U U U U U

U S228P775FD11.T0 U U U U S228P7361FA1.T0,S228P7478RF7.T0 S228P7330FG2.T0 U S213P602880RD2.T0 S213P602880RD2.T0 U U U S228P771RB5.T0,S228P7139FB10.T0 U U U U U U U U U U U U S228P7107RD3.T0,S228P7171FC4.T0,S228P7199FC4.T0 U U U U U S228P7223RG8.T0 U U U G248P800490RB4.T0 G248P800490RB4.T0 G248P800490RB4.T0 U U U U S228P7371FB4.T0 U U U U U U U

U S213P66022RA11.T0 U U U S228P7218FH10.T0 U U U U U U U U U U U U U U U U U U U U U U S228P7463FA12.T0 S228P752FB12.T0 U U U U U U S228P7198RA8.T0 U U U U U U S213P601967FH12.T0 U U U U U U U U

U U U U U U U U U U S249P7164RE10.T0 U U U U U U U U U U S228P7145FF9.T0 U U U U U U S228P7192RA7.T0 U U U U S213P67729FB4.T0 S213P67729FB4.T0 U U U U U U U U U U S228P7200FA6.T0 U S228P7229FH10.T0 U U U S228P7447RG10.T0

U U U U U U U S228P7238FC3.T0 S228P7238FC3.T0 U U U U U U U S228P7326FE9.T0 U U U U U U U U U U S228P7195FC7.T0 U U S228P7277RG1.T0 S228P750RF12.T0 U U U U U U U U U U U U U U U U U U U U

U U U U U U U U S228P778RA1.T0 U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U U S228P7123RA11.T0 S228P7466RE3.T0 U U U U

U U U U

ALLELE_SETS TSC,WGS TSC TSC TSC,WGS TSC TSC TSC TSC TSC TSC,WGS TSC,WGS TSC TSC TSC,WGS TSC TSC TSC,WGS TSC TSC TSC TSC TSC TSC,WGS TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC WCS,WGS WCS WCS WCS,WGS WCS,TSC,WGS WCS WCS WCS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

METHOD bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq findmatch bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq findmatch bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq

DATA_SET TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC TSC WCS WCS WCS WCS WCS WCS WCS WCS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

GENE_NAME none none none none none none none none none none none none none none none none none none none none none none none NM_138963 none none none none none none none none none none none none none none none none none NM_014893 none none none none NM_004654 none none none none

GENE_TYPE none none none none none none none none none none none none none none none none none none none none none none none intron none none none none none none none none none none none none none none none none none intron none none none none intron none none none none

IS_CODING N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

TRF_CHR TRF_START U 0 U 0 U 0 U 0 U 0 chrY 19749344 chrY 17747548 chrY 19749344 U 0 U 0 U 0 U 0 chrY 10117361 U 0 chrY 9254608 chrY 9254713 U 0 chrY 17572975 chrY 22099719 chrY 22099901 U 0 chrY 17810403 U 0 U 0 chrY 22703194 chrY 22703194 U 0 U 0 U 0 chrY 10111955 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 U 0 chrY 16254194 chrY 16254194 U 0 U 0 chrY 13319838 U 0 U 0 chrY 10052098 U 0

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

none none none none NM_173700 none none none none none none none none none NM_014893 none none none none none none none none none none none none none none none none none none NM_003308 none none none none none none none none none none none NM_002760 none none NM_033284 none none none

none none none none intron none none none none none none none none none intron none none none none none none none none none none none none none none none none none none promoter none none none none none none none none none none none intron none none intron none none none

N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

U U chrY chrY chrY chrY U U chrY U U chrY chrY U U U U U chrY U U chrY chrY chrY chrY chrY chrY U chrY chrY chrY chrY chrY U chrY U U U U U chrY chrY U chrY U U chrY chrY chrY chrY chrY U

0 0 17784435 9934192 20008602 22755119 0 0 9934192 0 0 19506283 15719799 0 0 0 0 0 17860941 0 0 17860941 14368865 14368865 14368865 9934093 21610410 0 15552816 16852512 19203533 16587721 16587721 0 6173621 0 0 0 0 0 7447757 19800386 0 10416771 0 0 20105773 19192982 6996563 15879880 9934192 0

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

none none none none none none none none none none none none none none none none none NM_014893 none none none NM_014893 none none none none none none none none none none none none none none none none none NM_033284 none none none none none NM_004654 none none none none none none

none none none none none none none none none none none none none none none none none intron none none none intron none none none none none none none none none none none none none none none none none intron none none none none none intron none none none none none none

N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

chrY U chrY chrY chrY U chrY chrY U U chrY U chrY chrY U chrY chrY chrY U chrY U chrY chrY chrY U U chrY U U U chrY chrY chrY U chrY chrY U chrY U chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY U

17157017 0 12520770 19850478 15719799 0 57368592 57368592 0 0 21610410 0 15022041 21610410 0 7547212 8224536 15148894 0 22068499 0 15298880 27155761 10416771 0 0 17198373 0 0 0 16434258 17534874 9254608 0 9254713 8509278 0 14680718 0 6996563 15519350 15519350 15519350 7598147 8774289 13319838 7447757 10367711 10367711 8456395 15681109 0

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

none none none none none none NM_004654 none none NM_152585 none none none none none none none none none none none none none none none none NM_032576 none none none none none none none none none none none none none none NM_014893 none none none none none NM_033284 none none none none

none none none none none none intron none none intron none none none none none none none none none none none none none none none none terminator none none none none none none none none none none none none none none intron none none none none none intron none none none none

N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

U chrY chrY chrY chrY U U U chrY chrY U chrY chrY chrY chrY chrY U chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY U chrY U U U chrY U U chrY chrY chrY chrY U chrY chrY chrY chrY U U U U U

0 15852466 19506283 17757965 17757965 0 0 0 20972981 22860291 0 8524395 8524395 17534874 9954418 9113485 0 9934093 15065829 9964818 9964818 15702974 8693345 12465682 8791057 10499874 20154658 9934093 9934192 16994687 0 16831086 0 0 0 10473497 0 0 10357658 10357658 12465682 15247193 0 16444812 13142411 16279459 15681109 0 0 0 0 0

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none NM_007125 none none none none none none none none none NM_003308 none none

none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none intron none none none none none none none none none terminator none none

N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

U chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY U U U chrY U chrY chrY chrY chrY chrY chrY chrY chrY chrY U U chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY U U U chrY U chrY U U chrY chrY chrY chrY U chrY

0 17020046 17850034 16684408 16684408 16684408 12239170 9254608 9254608 19908325 14680718 19705168 0 0 0 12422272 0 14782445 19036687 20105773 19450887 19450887 17856670 17856670 17856670 17856670 0 0 16708380 16708380 21533479 9934093 6389443 6173518 20576807 16994687 6269319 6269319 0 0 0 17157017 0 16488179 0 0 9084286 19800386 20576807 9961656 0 8469738

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq bl2seq findmatch findmatch findmatch findmatch findmatch findmatch findmatch findmatch findmatch findmatch

WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS WGS

none none none none none none none none none NM_152585 none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none

none none none none none none none none none intron none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none none

N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N N

chrY U U U U chrY chrY U U chrY chrY chrY chrY chrY chrY U chrY chrY chrY chrY chrY chrY chrY U chrY U chrY chrY U chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY chrY U chrY U U chrY U chrY U chrY U U U

14680718 0 0 0 0 9934192 9934192 0 0 22860291 9934192 15965458 15965458 15965458 15965458 0 15519350 15519350 15519350 17938724 19774292 19774299 17534874 0 6163595 0 11231149 57368592 0 12705042 15852466 20434390 20576807 7120173 19450887 9203681 7875432 12239170 12239170 12239170 0 16831314 0 0 12402561 0 27155761 0 7575637 0 0 0

WGS WGS WGS WGS

findmatch findmatch findmatch findmatch

WGS WGS WGS WGS

none none none none

none none none none

N N N N

U chrY U chrY

0 20878642 0 19958083

TRF_STOP TRF_SEQ 0U 0U 0U 0U 0U 19749436 catc 17747592 at 19749436 catc 0U 0U 0U 0U 10117423 at 0U 9254644 ac 9254758 ac 0U 17573017 gtt 22099808 aag 22099926 ca 0U 17810481 agat 0U 0U 22703371 agagat 22703371 agagat 0U 0U 0U 10111984 ac 0U 0U 0U 0U 0U 0U 0U 0U 0U 0U 0U 0U 16254229 ta 16254229 ta 0U 0U 13319872 gt 0U 0U 10052123 ac 0U

0U 0U 17784631 tttc 9934237 ac 20008757 tatac 22755317 agaa 0U 0U 9934237 ac 0U 0U 19506328 ac 15720150 atag 0U 0U 0U 0U 0U 17861135 ctc 0U 0U 17861135 ctc 14369159 ttc 14369159 ttc 14369159 ttc 9934123 ac 21610506 tttc 0U 15552854 ac 16852603 gaag 19203578 at 16587764 atac 16587764 atac 0U 6173662 ac 0U 0U 0U 0U 0U 7448421 agat 19800422 t 0U 10416803 gt 0U 0U 20105808 tg 19193011 tg 6996626 ac 15879965 tcta 9934237 ac 0U

17157085 tatc 0U 12520829 tatc 19850518 gt 15720150 atag 0U 57368630 caaa 57368630 caaa 0U 0U 21610506 tttc 0U 15022082 ttat 21610506 tttc 0U 7547253 ac 8224574 t 15148923 ta 0U 22068528 tg 0U 15298960 aaaaaaga 27155827 tggaa 10416803 gt 0U 0U 17198428 tc 0U 0U 0U 16434298 ac 17534922 ac 9254644 ac 0U 9254758 ac 8509335 tg 0U 14680806 atct 0U 6996626 ac 15519458 ta 15519458 ta 15519458 ta 7598192 ac 8774327 aat 13319872 gt 7448421 agat 10367883 cttt 10367883 cttt 8456434 ttctg 15681146 ac 0U

0U 15852502 att 19506328 ac 17758012 ta 17758012 ta 0U 0U 0U 20973028 ttta 22860320 tc 0U 8524859 ta 8524859 ta 17534922 ac 9954452 ac 9113524 aat 0U 9934123 ac 15065888 ta 9964869 at 9964869 at 15703020 tta 8693470 agaa 12466208 tatc 8791093 ga 10499909 ccacct 20154696 at 9934123 ac 9934237 ac 16994718 tg 0U 16831211 cttt 0U 0U 0U 10473526 tg 0U 0U 10357770 aaag 10357770 aaag 12466208 tatc 15247647 agat 0U 16444853 tta 13143437 ta 16279514 ac 15681146 ac 0U 0U 0U 0U 0U

0U 17020129 taga 17850195 gaaa 16684634 aaga 16684634 aaga 16684634 aaga 12308962 gaatggaatg 9254644 ac 9254644 ac 19908402 agat 14680806 atct 19705215 atac 0U 0U 0U 12422509 aagg 0U 14782749 ttc 19036755 aaagg 20105808 tg 19450928 tg 19450928 tg 17856740 aaag 17856740 aaag 17856740 aaag 17856740 aaag 0U 0U 16708415 a 16708415 a 21533522 tg 9934123 ac 6389517 ta 6173554 ac 20576854 ac 16994718 tg 6269464 tctt 6269464 tctt 0U 0U 0U 17157085 tatc 0U 16488217 at 0U 0U 9084341 at 19800422 t 20576854 ac 9961709 tg 0U 8469804 ctt

14680806 atct 0U 0U 0U 0U 9934237 ac 9934237 ac 0U 0U 22860320 tc 9934237 ac 15965614 at 15965614 at 15965614 at 15965614 at 0U 15519458 ta 15519458 ta 15519458 ta 17938787 agaa 19774323 tta 19774380 tattatatata 17534922 ac 0U 6163624 at 0U 11233048 ttcca 57368630 caaa 0U 12705071 ta 15852502 att 20434430 aac 20576854 ac 7120288 agat 19450928 tg 9203715 ac 7875620 tctt 12308962 gaatggaatg 12308962 gaatggaatg 12308962 gaatggaatg 0U 16831423 tatc 0U 0U 12402610 t 0U 27155827 tggaa 0U 7575694 ta 0U 0U 0U

0U 20878720 at 0U 19958129 a

SEQ ctac aaa ta aaaataa c atcc tatata atcc at a tt tc atatatat c ac ca aagaaa ttg gaa ca tt atag att t agagat agagat atag aa ttttc ca t agcagtta tattaaaatttcaatcaagtcacaaaagcagactaataaagtagaaaaaatcataca gtggtagt a caa ca g tt tttc gagaaggaaagagaga ct tt atat t tttc gt ca ta ac gta

t a tttc caca tacta agaa ac acac cacacaca g g acac taga t t ca ctca gt ttc aa t tct ttctcc tctt ct cacaca tttc c acac agga atatatatat gata atac c acacacac acaa cct agttta at g atag tt ttgt tg agaaa gt gt gtgt ac tatc acacac tt

tatc aaaa tcta gt agat a aaacaaa aaac aaaa tatatg tctt tc ttat ttct ga ac tt ta ggata gt ta gaaag tggaa gt ca g tctctc cata g aaag ac ca aaca cc ac tgtg t tatctatc ac ca aata aa tatatata acacacac aat tg agat cttt tttc tgttc ac ataag

aa tat acac atat atatatat t cg ac ttta tc a ta tatatat ca ca taataa ct acacacacat ta atat tatgtatata tta aaag tatctatc ga ccacctccacct atatat cacaca acac tg agtga cttt actc tt aa tgtg ata aaga agaa agg atctatct gata ctat tta ata cacaca ca c aac ac ct t

a taga aaag ga aag gg tggaa cac c taga tctatcta cata tattt ct aaaaaa gaag g cttctt aaaggaaagg gt gt gt aa aa aag aa ga g aaaaa aaaaaaaaa tgtgtgtg caca ta tacacc ca gt ctttcttt atc aaa ctct agtt tcta aga atat atatatatat cc aa tt ac tg ct ttcttcttc

tctatcta aa aaa acacac a acacacacac acac aa t ct acac at at tata ta ctt atatatatat aa aa agaaagaa tta ta ca aaaaaaga atatat ta ttcca caaacaaa gtgga ta tta aac ac gata tg ac tctttctt gaatg aatgg aatgg ac tatc tccattcaattcctt cattccatttgatgccattccatttgatgccatcccatgacattccattccattcgagtccattccgttccaattcattccattccgtttcatcaaattcgagtcctttccagtacatttcattccaa tttttttttttttttttttttttttttttt agtggagtggaaagg tggaatggaatggaatggaatggaa cattccatttgatgt atatatatatatatatat atcctttccattccatttcattccattcctttctattccattccatttcattcgatttgattccattctgttctattccattcaattctttttcattccattcgaatcctttctattgcagtccattccattcgagt ataaacactctgaatgtt aaaaaa

agtggagtggaaaggaatggaatgg tatatatatatatatatata tatatatatatatatatatatatatatatgtatatataaa aaaaaaaaaaaaaaaaaaaaaaaaa

CLASS (CTAC)n (A)n (TA)n (A)n c (ATCC)n (TA)n (ATCC)n (AT)n a (T)n (TC)n (AT)n c (AC)n (CA)n (AAGAAA)n (TTG)n (GAA)n (CA)n (T)n (ATAG)n (ATT)n t (AG)n (AG)n (ATAG)n (A)n (T)n (CA)n t (AGCAGTTA)n (TATTAAAATTTCAATCAAGTCACAAAAGCAGACTAATAAAGTAGAAAAAATCATACA)n (GTG)n a (CAA)n (CA)n g (T)n (TTTC)n (GA)n (CT)n (T)n (ATAT)n t (TTTC)n (GT)n (CA)n (TA)n (AC)n (GTA)n

t a (TTTC)n (CACA)n (TACTA)n (AGAA)n (AC)n (ACAC)n (CA)n g g (ACAC)n (TAGA)n t t (CA)n (CTCA)n (GT)n (TTC)n (A)n t (TCT)n (TTCTCC)n (TCTT)n (CT)n (CA)n (TTTC)n c (ACAC)n (AGGA)n (AT)n (GATA)n (ATAC)n c (AC)n (ACAA)n (CCT)n (AGTTTA)n (AT)n g (ATAG)n (T)n (TTGT)n (TG)n (AGAAA)n (GT)n (GT)n (GTGT)n (AC)n (TATC)n (AC)n (T)n

(TATC)n (A)n (TCTA)n (GT)n (AGAT)n a (A)n (AAAC)n (A)n (TA)n (TCTT)n (TC)n (TTAT)n (TTCT)n (GA)n (AC)n (T)n (TA)n (GGATA)n (GT)n (TA)n (GAAAG)n (TGGAA)n (GT)n (CA)n g (TC)n (CATA)n g (AAAG)n (AC)n (CA)n (AACA)n (C)n (AC)n (TGTG)n t (TATC)n (AC)n (CA)n (AATA)n (A)n (TA)n (AC)n (AAT)n (TG)n (AGAT)n (CTTT)n (TTTC)n (TGTTC)n (AC)n (ATAAG)n

(A)n (TAT)n (ACAC)n (ATAT)n (AT)n t (CG)n (AC)n (TTTA)n (TC)n a (TA)n (TA)n (CA)n (CA)n (TAA)n (CT)n (AC)n (TA)n (ATAT)n (TATG)n (TTA)n (AAAG)n (TATC)n (GA)n (CCA)n (AT)n (CA)n (ACAC)n (TG)n (AGTGA)n (CTTT)n (ACTC)n (T)n (A)n (TGTG)n (ATA)n (AAGA)n (AGAA)n (AGG)n (ATCT)n (GATA)n (CTAT)n (TTA)n (ATA)n (CA)n (CA)n c (AAC)n (AC)n (CT)n t

a (TAGA)n (AAAG)n (GA)n (AAG)n (G)n (TGGAA)n (CAC)n c (TAGA)n (TCTA)n (CATA)n (TATTT)n (CT)n (A)n (GAAG)n g (CTT)n (AAAGG)n (GT)n (GT)n (GT)n (A)n (A)n (AAG)n (A)n (GA)n g (A)n (A)n (TG)n (CACA)n (TA)n (TACACC)n (CA)n (GT)n (CTTT)n (ATC)n (A)n (CTCT)n (AGTT)n (TCTA)n (AGA)n (ATAT)n (AT)n (C)n (A)n (T)n (AC)n (TG)n (CT)n (TTC)n

(TCTA)n (A)n (A)n (AC)n a (AC)n (ACAC)n (A)n t (CT)n (ACAC)n (AT)n (AT)n (TATA)n (TA)n (CTT)n (AT)n (A)n (A)n (AGAA)n (TTA)n (TA)n (CA)n (AAAAAAGA)n (AT)n (TA)n (TTCCA)n (CAAA)n (GTGGA)n (TA)n (TTA)n (AAC)n (AC)n (GATA)n (TG)n (AC)n (TCTT)n (GAATG)n (AATGG)n (AATGG)n (AC)n (TATC)n (TCCAT)n (CATTCCATTTGATGCCATTCCATTTGATGCCATCCCATGACATTCCATTCCATTCGAGTCCATTCCGTTCCAATTCATTCCAT (T)n (AGTGGAGTGGAAAGG)n (TGGAA)n (CATTCCATTTGATGT)n (AT)n (ATCCTTTCCATTCCATTTCATTCCATTCCTTTCTATTCCATTCCATTTCATTCGATTTGATTCCATTCTGTTCTATTCCATTCAA (ATAAACACTCTGAATGTT)n (A)n

(AGTGG)n (TA)n (TA)n (A)n

CLASS_TYPE other repeat expansions other repeat expansions single bases other repeat expansions other other single bases repeat expansions other repeat expansions single bases other other other other other other repeat expansions other other single bases repeat expansions repeat expansions other repeat expansions repeat expansions other single bases other other repeat expansions single bases other other single bases repeat expansions other repeat expansions other repeat expansions other single bases other other other other other other

CONTIG NT_091573 NT_091573 NT_011878 NT_091573 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011878 NT_011878 NT_011878 NT_086998 NT_086998 NT_091573 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_091573 NT_011875 NT_011903 NT_011903 NT_011878 NT_011878 NT_011878 NT_011878 NT_011896 NT_011896 NT_091573 NT_011878 NT_011878 NT_011878 NT_011878 NT_011878 NT_011878 NT_011878 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_086998 NT_011875 NT_011875 NT_086998 NT_011878 NT_086998

SS_ID 49862881 49862882 49869093 49877207 49877818 49879988 49882849 49886183 49891961 49891962 49891963 49897196 49897244 49906112 49906197 49906198 49914136 49915857 49918662 49918663 49928944 49943586 49953586 49959732 49966597 49966598 49975741 49975742 49975743 49979737 49980933 49981124 49984697 49998575 49999456 49999548 49999549 49999550 50010208 50015198 50016058 50018807 50019834 50019835 50020138 50020813 50022125 50022451 50025082 50029666 50030326

single bases single bases other other other other other other repeat expansions single bases single bases other other single bases single bases other other other other repeat expansions single bases other other other other repeat expansions other single bases other other repeat expansions other other single bases repeat expansions other other other other single bases other repeat expansions other other other other other other other other repeat expansions repeat expansions

NT_011875 NT_011875 NT_011875 NT_011878 NT_011875 NT_011903 NT_011875 NT_011878 NT_011878 NT_011896 NT_011896 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_091573 NT_011896 NT_011875 NT_011875 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011878 NT_011875 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011878 NT_011896 NT_011896 NT_086998 NT_091573 NT_091573 NT_091573 NT_011896 NT_011875 NT_091573 NT_011878 NT_011875 NT_011896 NT_011875 NT_011875 NT_011896 NT_011875 NT_011878 NT_011875

50034610 50035313 50037453 50037987 50038621 50039638 50039975 50045534 50045535 50046338 50046339 50048167 50049164 50049523 50050481 50050482 50050559 50050859 50053155 50055551 50055877 50058180 50058835 50058836 50058837 50064557 50064902 50066846 50067159 50068282 50072906 50073887 50073888 50077549 50077723 50077724 50077725 50084015 50084016 50084017 50088015 50088016 50090184 50090641 50090975 50091474 50092273 50093256 50093946 50095284 50095961 50097233

other repeat expansions other other other single bases repeat expansions other repeat expansions repeat expansions other other other other other other repeat expansions other other other other other other other other single bases repeat expansions other single bases other other other other repeat expansions other other single bases repeat expansions other other other repeat expansions repeat expansions repeat expansions other other other other other other other other

NT_011875 NT_091573 NT_011875 NT_011875 NT_011875 NT_011896 NT_091573 NT_091573 NT_091573 NT_091573 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_011896 NT_011896 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011903 NT_011878 NT_011896 NT_011875 NT_011875 NT_011875 NT_011896 NT_011875 NT_011875 NT_011875 NT_086998 NT_086998 NT_086998 NT_011896 NT_011875 NT_011875 NT_011878 NT_011896 NT_011875 NT_011875 NT_011875 NT_011896 NT_011896 NT_011875 NT_011896 NT_011878 NT_011878 NT_011896 NT_011875 NT_091573

50099767 50101043 50101119 50104623 50106937 50107222 50108660 50108661 50108662 50108663 50115603 50115604 50116939 50118235 50118548 50120246 50121562 50121886 50123493 50124494 50124816 50126148 50127496 50128345 50128626 50131169 50136666 50137611 50139281 50139282 50139635 50145877 50148892 50148893 50148894 50151895 50152220 50152221 50153534 50155920 50157582 50157583 50157584 50158922 50160548 50161255 50161865 50162508 50162509 50163151 50163480 50164592

repeat expansions other other other repeat expansions single bases other other other other single bases other repeat expansions other other repeat expansions other repeat expansions other other repeat expansions other other repeat expansions other repeat expansions repeat expansions repeat expansions other other other other other repeat expansions repeat expansions other other other other other repeat expansions other other other other repeat expansions other single bases other other other single bases

NT_091573 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_011875 NT_011903 NT_091573 NT_011896 NT_011896 NT_011875 NT_011878 NT_086998 NT_011875 NT_011878 NT_011875 NT_011878 NT_011878 NT_011875 NT_011896 NT_011875 NT_011896 NT_011878 NT_011875 NT_011878 NT_011878 NT_011875 NT_011903 NT_011875 NT_091573 NT_091573 NT_091573 NT_011878 NT_011875 NT_091573 NT_011878 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_011878 NT_011878 NT_011878 NT_011875

50164593 50164777 50166741 50167713 50167714 50169667 50171627 50173647 50175293 50180482 50180575 50181532 50181533 50183828 50184468 50186163 50187451 50191805 50192138 50193426 50193427 50200720 50201615 50202006 50202682 50206376 50207238 50212899 50212900 50214746 50215334 50216903 50216975 50216976 50216977 50217271 50219134 50220246 50220577 50220578 50222217 50226220 50231845 50234182 50237787 50238446 50240102 50241055 50241550 50241551 50241552 50245106

single bases other other other other repeat expansions other other single bases other repeat expansions other other other repeat expansions other single bases repeat expansions repeat expansions other other other repeat expansions repeat expansions other repeat expansions other single bases repeat expansions repeat expansions repeat expansions other other other other other repeat expansions other repeat expansions other other other other other repeat expansions repeat expansions repeat expansions repeat expansions other other other repeat expansions

NT_011896 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_086998 NT_086998 NT_011875 NT_011875 NT_011875 NT_011896 NT_011896 NT_091573 NT_011875 NT_011896 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011878 NT_011875 NT_011875 NT_011875 NT_011878 NT_011896 NT_011896 NT_011875 NT_011875 NT_011896 NT_011896 NT_091573 NT_011875 NT_011896 NT_011875 NT_091573 NT_011875 NT_011875 NT_011878 NT_086998 NT_011875 NT_011875 NT_011878 NT_091573 NT_011896

50247083 50249224 50249895 50250068 50250069 50250070 50252328 50254848 50254849 50256799 50257442 50258994 50261515 50261516 50262776 50264227 50268295 50268627 50269266 50269267 50270251 50273535 50273863 50273864 50273865 50273866 50273867 50274541 50277652 50277653 50279127 50279420 50282349 50283951 50285830 50286160 50290401 50290402 50292394 50292407 50293382 50297347 50299527 50300800 50300801 50301359 50302091 50304385 50304685 50305901 50310122 50311560

repeat expansions repeat expansions repeat expansions repeat expansions single bases repeat expansions other repeat expansions single bases other other other other other other other repeat expansions repeat expansions repeat expansions repeat expansions other other other other repeat expansions other other repeat expansions other other other other other other other other repeat expansions other other other other other repeat expansions other repeat expansions other repeat expansions other repeat expansions other other repeat expansions

NT_011875 NT_091573 NT_011878 NT_011878 NT_011878 NT_011878 NT_011878 NT_091573 NT_011878 NT_011903 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011878 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_011896 NT_011875 NT_087001 NT_091573 NT_011903 NT_011875 NT_011875 NT_011875 NT_011875 NT_011896 NT_011875 NT_086998 NT_011896 NT_011875 NT_011875 NT_011875 NT_011896 NT_011875 NT_025975 NT_025975 NT_011875 NT_011903 NT_011903 NT_025975 NT_011896 NT_025975 NT_011896 NT_091573

50313843 50314023 50314468 50320038 50320039 50320040 50320041 50322216 50322734 50324021 50327523 50328872 50328873 50328874 50328875 50329135 50329552 50329553 50329554 50330217 50334555 50334556 50335738 50340610 50341237 50341953 50343865 50345654 50349812 50349813 50350454 50350765 50350766 50351060 50352345 50358592 50359213 50361342 50361343 50361344 50363133 50363356 50364540 50370438 50371739 50373000 50375950 50377676 50378804 50378972 50385383 50387587

repeat expansions repeat expansions repeat expansions repeat expansions

NT_011903 NT_011875 NT_091573 NT_011875

50388538 50388985 50390485 50391054

Bin 1 200001 400001 600001 800001 1000001 1200001 1400001 1600001 1800001 2000001 2200001 2400001 2600001 2800001 3000001 3200001 3400001 3600001 3800001 4000001 4200001 4400001 4600001 4800001 5000001 5200001 5400001 5600001 5800001 6000001 6200001 6400001 6600001 6800001 7000001 7200001 7400001 7600001 7800001 8000001 8200001 8400001 8600001 8800001 9000001 9200001 9400001 9600001 9800001 10000001

Trace Count

Base Count Indel Count SNP Count Indel/SNP ratio Base Count(kb) Hotspot 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 125.84 63327 2 11 0.18 63.33 158.16 79208 0 12 0 79.21 1 566 0 0 #DIV/0! 0.57 8 3776 0 0 #DIV/0! 3.78 0 0 0 0 #DIV/0! 0 9 3586 2 5 0.4 3.59 1 496 0 0 #DIV/0! 0.5 2 1204 1 0 #DIV/0! 1.2 0 0 0 0 #DIV/0! 0 2 1178 0 0 #DIV/0! 1.18 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 2 821 0 0 #DIV/0! 0.82 2 995 0 0 #DIV/0! 1 5 2473 0 21 0 2.47 SNP 61 33479 5 11 0.45 33.48 50 24170 3 3 1 24.17 56 30391 0 6 0 30.39 114 54896 0 3 0 54.9 216 106714 4 10 0.4 106.71 153 74133 9 153 0.06 74.13 SNP 68 35432 1 4 0.25 35.43 158.79 78366 9 25 0.36 78.37 134.21 64451 0 10 0 64.45 135 69842 3 6 0.5 69.84 272 134959 0 21 0 134.96 152.94 78498 3 12 0.25 78.5 335.07 159327 7 11 0.64 159.33 203 97463 3 17 0.18 97.46 190 93131 1 8 0.13 93.13 178.41 88472 4 5 0.8 88.47 119.59 64147 12 32 0.38 64.15 0 0 0 0 #DIV/0! 0 0 0 0 0 #DIV/0! 0 203 105340 34 100 0.34 105.34 INDEL/SNP 161 81371 3 12 0.25 81.37

10200001 10400001 10600001 10800001 11000001 11200001 11400001 11600001 11800001 12000001 12200001 12400001 12600001 12800001 13000001 13200001 13400001 13600001 13800001 14000001 14200001 14400001 14600001 14800001 15000001 15200001 15400001 15600001 15800001 16000001 16200001 16400001 16600001 16800001 17000001 17200001 17400001 17600001 17800001 18000001 18200001 18400001 18600001 18800001 19000001 19200001 19400001 19600001 19800001 20000001 20200001 20400001

109.27 185.73 43 0 0 2 0 0 0 0 11.37 54.64 82 73 92.1 230.91 134.71 128.29 174.5 121.5 118 36 125 116 134 146 140 138.78 82.51 130.67 157.05 137.91 86.1 83 231 186.22 143.35 145.43 129 10 0 7 3 2 35 49 167 182 72 237 130 143.05

56062 82481 16484 0 0 599 0 0 0 0 5385 27014 39288 37070 46527 115998 67864 65897 89343 63400 58318 16549 60776 58101 66299 71003 70013 70563 42611 61564 78749 67902 43767 41615 119043 94720 71911 72381 62875 5714 0 3002 1562 944 19536 24715 82644 93154 36881 121758 67074 74915

6 15 25 0 0 1 0 0 0 0 4 5 1 1 1 3 1 3 1 1 4 0 6 0 6 3 11 6 11 2 5 6 7 5 6 0 4 5 12 0 0 0 0 0 2 1 5 6 5 5 0 4

8 660 280 0 0 1 0 0 0 0 0 6 5 2 8 11 9 4 9 4 12 1 9 5 13 14 10 5 10 2 9 16 12 7 12 11 5 5 4 1 0 0 0 0 2 1 29 9 9 15 3 10

0.75 0.02 0.09 #DIV/0! #DIV/0! 1 #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! 0.83 0.2 0.5 0.13 0.27 0.11 0.75 0.11 0.25 0.33 0 0.67 0 0.46 0.21 1.1 1.2 1.1 1 0.56 0.38 0.58 0.71 0.5 0 0.8 1 3 0 #DIV/0! #DIV/0! #DIV/0! #DIV/0! 1 1 0.17 0.67 0.56 0.33 0 0.4

56.06 82.48 SNP 16.48 INDEL/SNP 0 0 0.6 0 0 0 0 5.39 INDEL 27.01 39.29 37.07 46.53 116 67.86 65.9 89.34 63.4 58.32 16.55 60.78 58.1 66.3 71 70.01 70.56 42.61 61.56 78.75 67.9 43.77 41.62 119.04 94.72 71.91 72.38 62.88 5.71 0 3 1.56 0.94 19.54 24.72 82.64 93.15 36.88 121.76 67.07 74.92

20600001 20800001 21000001 21200001 21400001 21600001 21800001 22000001 22200001 22400001 22600001 22800001 23000001 23200001 23400001 23600001 23800001 24000001 24200001 24400001 24600001 24800001 25000001 25200001 25400001 25600001 25800001 26000001 26200001 26400001 26600001 26800001 27000001 27200001 27400001 27600001 27800001 28000001 28200001 28400001 28600001 28800001 29000001 29200001 29400001 29600001 29800001 30000001 30200001 30400001 30600001 30800001

5.96 131 134.61 145.4 55.53 176.47 301 168 74 28 174.02 134.98 2 44 2 17 6 8 7 13 1 11 0 85 0 5 0 12 8 18.01 7.99 3 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

3245 68401 69542 73339 28333 91356 150829 85093 35736 15569 80521 68044 1176 21334 928 8528 2771 4895 3730 6711 209 6033 0 32157 0 2580 0 6680 4382 7878 4214 1182 8177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 2 0 3 2 3 0 3 5 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 4 6 10 9 9 13 14 74 2 17 0 0 7 0 2 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

#DIV/0! 0.5 0 0.3 0.22 0.33 0 0.21 0.07 0 0.18 #DIV/0! #DIV/0! 0 #DIV/0! 0 #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! 0 #DIV/0! #DIV/0! #DIV/0! 0 0 #DIV/0! #DIV/0! #DIV/0! 0.09 #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0!

3.25 68.4 69.54 73.34 28.33 91.36 150.83 85.09 35.74 SNP 15.57 80.52 68.04 1.18 21.33 0.93 8.53 2.77 4.9 3.73 6.71 0.21 6.03 0 32.16 0 2.58 0 6.68 4.38 7.88 4.21 1.18 8.18 INDEL/SNP 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

31000001 31200001 31400001 31600001 31800001 32000001 32200001 32400001 32600001 32800001 33000001 33200001 33400001 33600001 33800001 34000001 34200001 34400001 34600001 34800001 35000001 35200001 35400001 35600001 35800001 36000001 36200001 36400001 36600001 36800001 37000001 37200001 37400001 37600001 37800001 38000001 38200001 38400001 38600001 38800001 39000001 39200001 39400001 39600001 39800001 40000001 40200001 40400001 40600001 40800001 41000001 41200001

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

#DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0!

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

41400001 41600001 41800001 42000001 42200001 42400001 42600001 42800001 43000001 43200001 43400001 43600001 43800001 44000001 44200001 44400001 44600001 44800001 45000001 45200001 45400001 45600001 45800001 46000001 46200001 46400001 46600001 46800001 47000001 47200001 47400001 47600001 47800001 48000001 48200001 48400001 48600001 48800001 49000001 49200001 49400001 49600001 49800001 50000001 50200001 50400001 50600001 50800001 51000001 51200001 51400001 51600001

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

#DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0!

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

51800001 52000001 52200001 52400001 52600001 52800001 53000001 53200001 53400001 53600001 53800001 54000001 54200001 54400001 54600001 54800001 55000001 55200001 55400001 55600001 55800001 56000001 56200001 56400001 56600001 56800001 57000001 57200001 57400001 57600001

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 52 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22618 23753 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 45 0 0

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 307 378 0 0

#DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! #DIV/0! 0.02 0.12 #DIV/0! #DIV/0!

0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22.62 SNP 23.75 INDEL/SNP 0 0

Pvalue(Indel/SNP)

6.40E-63

1.16E-72

1.31805558488310e-19/5.8562822221894e-09

0 1.64458645507745e-96/0

1.22E-06

6.24E-36

7.04351689972368e-14/7.35550526237322e-285

0 3.51783379534139e-223/0

5000 4750 4500 4250 4000 3750 3500 3250 3000 2750

Column B Column D Column E

2500 2250

Column G

2000 1750 1500 1250 1000 750 500 250 0 126000017200001 122000011740000122600001278000013300000138200001434000014860000153800001

Column B Column D Column E Column G