Rict Pandc Example 1
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***DRAFT***
***DRAFT*** RICT – Guide to Predict and Classify – Example 1
1.1:
Predict and Classify for a Single Year for Three SEPA Sites
1.
Data to be Provided/Specified
a)
Environmental Variable Data The EV data is held in an XML file called SEPA_3_EV_2007.XML and is stored in a folder called RICT_Input_Files in the local c: drive – see end of example for actual content.
b)
Observed Index Data The Observed Index file is held in an XML file called SEPA_3_OEI_2007.XML and is stored in a folder called RICT_Input_Files in the local c: drive - see end of example for actual content.
c)
Settings for the Run The settings for the run match the settings in the Default Settings file (except for changing the Run Name if desired) – see end of example for actual content.
d)
Bias Data for the Run The Bias data for the run matches the bias data in the file SEPA_Bias.XML which is set up as the Default Bias file - see end of example for actual content.
e)
Limits for the Run The Limits for the run match the Limits data in the file New_Limits.XML which is set up as the Default Limits file - see end of example for actual content.
Screenshots of the Run 1.
Start Run Click on Create a New Run in the Run Menu:
2.
Specify Run Type Click on Predict and Classify
3.
Upload EV File Click on Browse and then navigate to c:/RICT_Input_Files, if necessary:
Double click on file SEPA_3_EV_2007.XML (or select and click on Open).
4.
Upload Observed Index File Click on Browse
Double click on file SEPA_3_OEI_2007.XML (or select and click on Open).
5.
Continue to Schedule Run All required files are uploaded so click on Continue
6.
Amend Run Name Click on Settings
Amend Run Name to ‘P&C – Example 1’ and click on Apply.
7.
Schedule Run As default Settings (apart from Run Name), Bias and Limits are being used there is no need to amend any other data. Therefore, simply click on Schedule Run:
8.
Wait for Run to Finish Once the run is finished a green tick will be displayed at the end of the run entry:
9.
View and Extract Prediction Data Clicking on the right arrow to the right of the green tick gives access to a number of shortcuts:
Click on the reports icon which will display the Reports Menu:
Click on Predictions to display the Predictions report:
Click on Output to Excel: The data will be exported and opened automatically in excel (although this may depend on the local PC settings).
10.
View and Extract Classification Data Click on the Available Reports ‘breadcrumb’:
Click on Classifications to display the Classifications overview report:
Click on Report options icon and select Download:
Click on csv option:
Content of EV File WQMASTER 2008-02-14 SEPA_3 9875 <EV ID="NGR_LETTERS"> NGR_LETTERS NT <EV ID="NGR_EAST"> NGR_EAST 08192 <EV ID="NGR_NORTH"> NGR_NORTH 36934 <EV ID="ALTITUDE"> ALTITUDE 190 <EV ID="SLOPE"> SLOPE 1.1 <EV ID="DISCHARGE"> DISCHARGE 3 <EV ID="DIST_FROM_SOURCE"> DIST_FROM_SOURCE 11.4 <EV ID="MEAN_WIDTH"> MEAN_WIDTH 2.625 <EV ID="MEAN_DEPTH"> MEAN_DEPTH 40 <EV ID="ALKALINITY"> ALKALINITY 80.9581 <EV ID="BOULDER_COBBLES"> BOULDER_COBBLES 12.6667 <EV ID="PEBBLES_GRAVEL"> PEBBLES_GRAVEL 46.6667 <EV ID="SAND"> SAND 30.8333 <EV ID="SILT_CLAY"> SILT_CLAY 9.8333 10480 <EV ID="NGR_LETTERS"> NGR_LETTERS NO <EV ID="NGR_EAST">
NGR_EAST 41489 <EV ID="NGR_NORTH"> NGR_NORTH 14956 <EV ID="ALTITUDE"> ALTITUDE 28 <EV ID="SLOPE"> SLOPE 10 <EV ID="DISCHARGE"> DISCHARGE 2 <EV ID="DIST_FROM_SOURCE"> DIST_FROM_SOURCE 14.4 <EV ID="MEAN_WIDTH"> MEAN_WIDTH 8.5167 <EV ID="MEAN_DEPTH"> MEAN_DEPTH 19.5 <EV ID="ALKALINITY"> ALKALINITY 97.325 <EV ID="BOULDER_COBBLES"> BOULDER_COBBLES 59.1667 <EV ID="PEBBLES_GRAVEL"> PEBBLES_GRAVEL 33.3333 <EV ID="SAND"> SAND 2 <EV ID="SILT_CLAY"> SILT_CLAY 5.5 11030 <EV ID="NGR_LETTERS"> NGR_LETTERS NO <EV ID="NGR_EAST"> NGR_EAST 24300 <EV ID="NGR_NORTH"> NGR_NORTH 54421 <EV ID="ALTITUDE"> ALTITUDE 190 <EV ID="SLOPE"> SLOPE 5 <EV ID="DISCHARGE">
DISCHARGE 2 <EV ID="DIST_FROM_SOURCE"> DIST_FROM_SOURCE 7 <EV ID="MEAN_WIDTH"> MEAN_WIDTH 4.25 <EV ID="MEAN_DEPTH"> MEAN_DEPTH 15.75 <EV ID="ALKALINITY"> ALKALINITY 50.1143 <EV ID="BOULDER_COBBLES"> BOULDER_COBBLES 40 <EV ID="PEBBLES_GRAVEL"> PEBBLES_GRAVEL 52.5 <EV ID="SAND"> SAND 6.25 <EV ID="SILT_CLAY"> SILT_CLAY 1.25
Content of Observed Index File WQMASTER 2008-03-06 SEPA_3 5.655172413793103448 164 29 4.25 51 12 6.739130434782608696 155 23
Content of Settings File <Setting Name="End_Group_Set"> 3 <Setting Name="Season"> 5 <Setting Name="Indices_Set"> 2 <Setting Name="PEV_Set"> 1 <Setting Name="Output_File_Prefix"> (Date)_rict_(Run_ID)_ <Setting Name="Run_Name"> Sepa_(Run_ID) <Setting Name="Multi-Year"> N <Setting Name="Ref Adjust"> Y <Setting Name="Predict_Taxa"> N <Setting Name="Predict_Taxonomic_Level"> TL1 <Setting Name="Simulation Iterations"> 500
Content of Bias File 1.62 1.62 1.62 1.6524 1.6524 1.6524 1.7982 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Content of Limits File <Bucket Classification="H" ID="H" RANK="1"> .8879 10 <Bucket Classification="G" ID="G" RANK="2"> .8879 .7417 <Bucket Classification="M" ID="M" RANK="3"> .7417 .5954 <Bucket Classification="P" ID="P" RANK="4"> .5954 .491 <Bucket Classification="B" ID="B" RANK="5"> .491 0 <Bucket Classification="H" ID="H" RANK="1"> 1.0059 5 <Bucket Classification="G" ID="G" RANK="2"> 1.0059 .8918 <Bucket Classification="M" ID="M" RANK="3"> .8918 .7778 <Bucket Classification="P" ID="P" RANK="4"> .7778 .6533 <Bucket Classification="B" ID="B" RANK="5"> .6533 0
***DRAFT*** RICT – Guide to Predict and Classify – Example 1
1.1:
Predict and Classify for a Single Year for Three SEPA Sites
1.
Data to be Provided/Specified
a)
Environmental Variable Data The EV data is held in an XML file called SEPA_3_EV_2007.XML and is stored in a folder called RICT_Input_Files in the local c: drive – see end of example for actual content.
b)
Observed Index Data The Observed Index file is held in an XML file called SEPA_3_OEI_2007.XML and is stored in a folder called RICT_Input_Files in the local c: drive - see end of example for actual content.
c)
Settings for the Run The settings for the run match the settings in the Default Settings file (except for changing the Run Name if desired) – see end of example for actual content.
d)
Bias Data for the Run The Bias data for the run matches the bias data in the file SEPA_Bias.XML which is set up as the Default Bias file - see end of example for actual content.
e)
Limits for the Run The Limits for the run match the Limits data in the file New_Limits.XML which is set up as the Default Limits file - see end of example for actual content.
Screenshots of the Run 1.
Start Run Click on Create a New Run in the Run Menu:
2.
Specify Run Type Click on Predict and Classify
3.
Upload EV File Click on Browse and then navigate to c:/RICT_Input_Files, if necessary:
Double click on file SEPA_3_EV_2007.XML (or select and click on Open).
4.
Upload Observed Index File Click on Browse
Double click on file SEPA_3_OEI_2007.XML (or select and click on Open).
5.
Continue to Schedule Run All required files are uploaded so click on Continue
6.
Amend Run Name Click on Settings
Amend Run Name to ‘P&C – Example 1’ and click on Apply.
7.
Schedule Run As default Settings (apart from Run Name), Bias and Limits are being used there is no need to amend any other data. Therefore, simply click on Schedule Run:
8.
Wait for Run to Finish Once the run is finished a green tick will be displayed at the end of the run entry:
9.
View and Extract Prediction Data Clicking on the right arrow to the right of the green tick gives access to a number of shortcuts:
Click on the reports icon which will display the Reports Menu:
Click on Predictions to display the Predictions report:
Click on Output to Excel: The data will be exported and opened automatically in excel (although this may depend on the local PC settings).
10.
View and Extract Classification Data Click on the Available Reports ‘breadcrumb’:
Click on Classifications to display the Classifications overview report:
Click on Report options icon and select Download:
Click on csv option:
Content of EV File
Content of Observed Index File
Content of Settings File
Content of Bias File
Content of Limits File
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