Microbial World
Prokaryotes: 1. Bacteria 2. Archae
Eukaryotes 1. 2. 3. 4.
Algae Fungi Protozoa Parasites
Fungi Features: Cell wall: Chitin Cell membrane:
Ergosterol Zymosterol Aerobic/ facultatively anaerobic Mostly microscopic Moisture essential for growth
Types of Fungi Yeasts: Single celled Reproduction: Budding
Molds: Long filaments (hyphae) Form mycelium Septate/ Non septate
Dimorphic
Importance Biologic recycling of organic matter Preparation of foods:
Beer Cheese Bread Wine Mushrooms
Economic impact: Plant diseases Source of biologically active compounds: •Hallucinogens •Adrenergic alkaloids •Vitamins •Mutagens
•Carcinogens •Antibiotics •Immunosuppressive agents •Potential anticancer substances
Groups 1. Zygomycetes:
Bread moulds (Rhizopus) Food spoilage organisms Rhizomucor
1. Basidiomycetes:
Common mushrooms Cryptococcus Malassezia
3. Ascomycetes:
Aspergillus Histoplasma Coccidioides Candida Pneumocystis Sporothrix Dermatophytes
4. Deuteromycetes (Fungi Imperfectii):
Medically & economically imp fungi Penicillin producing
Types of Fungal Diseases 1. Fungal allergies 2. Mycotoxicoses 3. Mycoses
Fungal Allergies Strong hypersensitivity reactions against: Fungal spores Fungal components
Do not require: Growth Viability
Depending upon the site of deposition of
allergens:
Rhinitis Sinusitis Bronchial asthma Alveolitis Generalized pneumonitis
Mycotoxicoses Mycetismus Mycotoxins: Amatoxins Phallotoxins Aflatoxin Ochratoxin Sporidesmin Zearalenone Sterigmatocystin
Target organ:
Liver
Mycoses Actual growth of a fungus on a human
or animal host Establishment of mycoses depends upon: Host defenses Size of innoculum Route of exposure Virulence of the fungus
Clinical Classification of Mycotic Infections Superficial: Pityriasis versicolor Tinea nigra
Cutaneous: Candidiasis Dermatophytosis
Subcutaneous: Rhinosporidiosis Rhinoentomophthoromycosis
Systemic:
Histoplasmosis Paracoccidioidomycosis Candidiasis Cryptococcosis Aspergillosis Mucormycosis
Specimen Collection, Handling & Transport Sample Collection: Primary criterion for diagnosis of mycotic infections Transportation & processing done ASAP
Tissue from site of active disease- ideal Most common specimens:
Respiratory secretions Hair Skin Nail Tissue Blood Bone marrow CSF
Respiratory Specimen Viscous material (Tracheal aspirate): Cotton Swab Specimen digested with trypsin & concentrated
Sputum: Deep cough early in the morning Nebulizer to induce sputum
Collected into a sterile screw top
container Media:
Non selective Media with antibiotics
KOH preparation
Mucin Collection Nasal decongestant spray Flush with 20ml N/S Forceful exhalation through nose Return collected in sterile pan
Skin: 70% isopropyl alcohol before sampling Scraped from outer edge of a surface lesion
Blood: Transport medium required
Exudates/ Pus: Sterile sealed container
Diagnosis Direct microscopic examination Culture Serology
Direct Microscopic Examination Wet preparations: KOH mount India Ink Calcofluor white
Histologic stains: Periodic- Acid Schiff (PAS ) stain Grocott- Gomori methenamine silver nitrate (GMS) stain H&E stain Giemsa stain Masson- Fontana stain
Culture Culture Media: Saboraud’s Dextrose Agar SDA with antibiotics Brain Heart Infusion (BHI) agar enriched with blood & antibiotics
Incubation: Temp: 25-30°C (37°C for dimorphic fungi) Duration: 4-6 weeks
Candida Candida: Part of normal flora of skin, mucus
membranes & GIT Candidiasis: Most common systemic mycoses Pathogenic strains:
C. C. C. C.
albicans tropicalis glabrata krusei
Clinical Classification of Candidiasis: Cutaneous & Mucosal candidiasis:
Thrush Stomatitis Esophagitis Systemic Candidiasis Esophagitis Chronic Mucocutaneous Candidiasis
Predisposing factors: Cutaneous & mucosal candidiasis: Physiologic: Pregnancy Old age Infancy Traumatic Hematologic: AIDS DM Iatrogenic: Antibiotics Steroids
Systemic Candidiasis: Immunosuppression Surgery Steroids Malignancies Cytoxic drugs
Morphology Dimorphism:
Yeast cells True hyphae Pseudohyphae Germ tubes
Microscopy: Spherical/ ellipsoidal budding yeasts Size: 3-6 μm Cornmeal agar: Chlamydiospores
Culture:
Species cannot be differenciated Within 24-48hrs Raised Cream coloured Opaque 1-2mm Hyphae penetrating the agar medium
Aspergillus Ubiquitous molds Numerous species Approx 20 cause human infection Pathogenic species: A. fumigatus A. flavus: Nose & PNS A. niger: systemic disease in immunocompromised
Clinical diseases: Otomycosis Fungal rhinosinusitis
Morphology Microscopy: Conidiophores Expand into large vesicles at the end Covered with phialides
Culture: Powdery Pigmented A. fumigatus: Gray, green A. flavus: Yellow- green A. niger: Black
Aspergillus niger & flavus
Mucormycosis Phycomycosis,
zygomycosis Molds Class: Zygomycetes Order: Mucorales Fungi: Ubiquitous Thermotolerant Saprophytes
At risk patients: Acidosis Leukemia Immunocompromise
Etiologic agents: Rhizopus oryzae R. rhizopodiformis Absidia corymbifera R. pusillus Rhizomucor spss. Mucor spss.
Clinical manifestations: Rhinocerebral mucormycosis Thoracic mucormycosis Cutaneous infections
Morphology Microscopy: Broad Sparsely septate hyphae (10μm) Twisted & ribbonlike Branching at rt. angles
Culture: Rapid growth Abundant, cottony aerial mycelia
Paracoccidioidomycosis C/A: Paracoccidioides brasiliensis Chronic granulomatous disease: Mucous membranes Skin Respiratory system
Most cases from Brazil Invade mucous memb of mouth→ teeth fall
out White plaques in buccal mucosa Histologically: Captain’s wheel
Cryptococcosis C. neoformans Distinctive yeast Diseases: Meningitis Pulmonary disease
Found in pigeon & chicken droppings Diagnosis: India ink test Latex agglutination test for cryptococcal antigen
India Ink staining of CSF
Polyenes Azoles Imidazoles Triazoles
Echinocandin
s Allylamines Flucytosine Griseofulvin
Polyenes Eg.: Amphotericin B Nystatin
MOA: Bind to sterols of eukaryotic cell memb→ leakage of cell contents
Amphotericin B:
Active against all fungi Leishmania Given parenterally Poor CSF penetration
ADRs:
Fever Rigor Nephrotoxicity Hyperkalemia Headache
Azoles Inhibit cyt p450 14α-demethylase
→inhibit fungal cell wall synthesis Active against: Candida Dermatophytes Aspergillus
Imidazole: Topical: Clotrimazole Systemic: Ketoconazole
Triazoles: Fluconazole: Inactive against invasive moulds Itraconazole: Inactive against zygomycetes
Echinocandins Capsofungin Inhibit cell wall glucan synthesis
→cell wall lysis Active against: Candida Aspergillus
Inactive against: Other moulds Cryptococcus
Allylamines Terbinafine Reduce ergosterol synthesis Active against dermatophytes Uses: Skin dermatophyte infection Nail dermatophyte infection
Flucytoscine: Incorporates into fungal mRNA instead of uracil
→ disruption to protein & DNA synthesis Activity: Cryptococcus Candida
Resistance: Common ADRs: Bone marrow toxicity Hepatotoxicity
Griseofulvin: MOA unclear Use: Nail infections
Mycotic Diseases of the External Ear
Otomycosis Dermatophytosis Chromoblastomycosis Sporotrichosis
Otomycosis
Defn: Superficial, diffuse, fungal
infection of the ear canal Predisposing condition usually present
Aetiological agents: Aspergillus: (Tropical & Subtropical regions) Niger Flavus Fumigatus
Candida: (Temperate regions) Albicans Parapsilosis Tropicalis
Penicillium Rhizopus Mixed
Epidemiology Environment: Warm Humid
Children less commonly affected Not contagious Predisposing factors: Seborrhic dermatitis Psoriasis Prolonged use of: Topical antibiotics Topical corticosteroids
Clinical Manifestations C/C: Aural fullness Pruritis Discharge
Otoscopy: Debris Erythematous/ oedematous ear
canal A. niger: (Blotting paper) Mat of fungus Black sporing heads
Chronic infection: Eczematoid change Lichenification
Diagnosis
Clinical Microscopic
examination Culture
Management Removal of debris Cleaning Antifungal agents: Local application Gauze packs Mercurochrome & boric acid
Mycotic diseases of the nose and nasal passages Entomophthoramycosis Rhinosporidiosis
Entomophthoramycosis Definition:
Chronic localised subcutaneous fungal infection that originates from nasal mucosa and spreads painlessly to the adjacent subcutaneous tissue of the face Rare Seen in healthy individuals Severe facial disfigurement C/A: Conidiobolus coronatus
Management Oral antifungal drugs Treatment continued 1mnth after
lesions have disappeared Surgical resection: Hastens spread of infection
Rhinosporidiosis Definition: Uncommon granulomatous infection that affects nasal mucosa, ocular conjunctiva & other mucosa
Etiology: Rhinosporidium seeberi Fungi: controversial 18S small subunit ribosomal DNA: Mesomycetozoa
In tissues: Thick walled sporangium like structures Endospores
Epidemiology Geographical distribution: South India Sri Lanka East Africa Central & South America
Natural habitat: Stagnant pools of fresh water
M>F Age:15-40yrs
Clinical Features Nasal obstruction Rhinoscopy: Pink/ Red/ Purple Papular/ Nodular Smooth surfaced Papillomatous/ Proliferative
Diagnosis: HPE: Large sporangia filled with spores Thick wall Operculum
Rhinosporidiosis
Management: Surgical excision Cauterization
Outcomes &
Complications: Recurrence
Mycotic Diseases of Paranasal Sinuses Classification (Based on HPE & C/F): 1. Invasive Sinusitis: 1. Active Invasive 2. Chronic Invasive 3. Chronic granulomatous invasive or paranasal granuloma
2. Noninvasive Sinusitis 3. Allergic Fungal Sinusitis
Invasive Fungal Sinusitis Diagnosis: Evidence of sinusitis: Radiographic Nasal endoscopy
Fungal hyphae: HPE
Etiological Agents Acute fulminant: Rhizopus spss. R. arrhizus
Absidia spss. Rhizomucor spss. Aspergillus spss. A. flavus A. fumigatus
Fusarium spss. S. apiospermum
Chronic invasive:
Alternaria spss. Aspergillus spss. Bipolaris spss. Curvularia spss. Exserohilum spss.
Granulomatous
invasive: A. flavus
Epidemiology
Worldwide Adults Immunocompromised children Risk factors:
Prolonged neutropenia Metabolic acidosis Hematological malignancies Haematopoetic stem cell transplant recipients Diabetics Corticosteroid therapy Deferoxamine treatment HIV infection
Clinical Features Acute Invasive: Immunocompromised Unilateral facial swelling Unilateral headache Nasal obstruction/ pain Serosanguinous nasal discharge Necrotic black lesions on:
Hard palate Nasal turbinate
Periorbital/ perinasal swelling Destruction of facial tissue Ptosis Proptosis Ophthalmoplegia Loss of vision
Chronic invasive:
Nasal obstruction Chronic sinusitis Thick nasal polyposis Thick purulent mucus Orbital apex syndrome Cavernous sinus thrombosis
Chronic granulomatous:
Nasal obstruction Unilateral facial discomfort Enlarging mass Proptosis
Diagnosis CT Scan: Acute invasive: Multiple sinuses Unilateral No air fluid level Thickening of sinus lining Bone destruction
Chronic invasive: Hyperdense mass Sinus wall erosion
Chronic
granulomatous: Opacification of sinuses Erosion
MRI: Cavernous sinus Cerebral
Local biopsy: HPE Direct microscopy: KOH mount
Culture
Management Control of underlying host disorders Removal of necrotic & infected tissue Effective antifungal therapy
Noninvasive Fungal Sinusitis Fungal ball: Dense mass of fungal hyphae
Aetiological agent: Aspergillus fumigatus Other Aspergillus spss S. apiospermum Alternaria
Epidemiology: Older age group F>M
Clinical Features Asymptomatic Nasal obstruction Purulent nasal
discharge Cacosmia Facial pain Unilateral symptoms Unusual symptoms:
Fever Cough Proptosis Epistaxis Diplopia Nasal polyp
Diagnosis CT Scan: Partial/ total opacification Flocculent calcification
Mucopurulent material: HPE: Dense matted fungal hyphae separate from but adjacent to the mucosa of sinus No allergic mucin No granulomatous reaction No fungal invasion
Management: Surgical removal No antifungal agents
Outcomes & Complications: Recurrence: Rare Intracerebral bleed/ infarct Invasive fungal sinusitis
Allergic Fungal Sinusitis Noninvasive
Immunocompetent individuals Chronic rhinosinusitis Criteria for diagnosis: Chronic rhinosinusitis (CT Scan) Allergic mucin Clusters of eosinophils Eosinophillic byproducts
Noninvasive fungal elements Type I (IgE mediated)
hypersensitivity Nasal polyposis
Ponikau et al. (1999): 210 pts with chronic rhinosinusitis Fungus in nasal mucus: 202 pts (96%) Surgical treatment: 101 Allergic mucin: 97 (96%) Fungal elements in HPE: 82 (81%)
Conclusion: AFS- Underdiagnosed disorder
Aetiology: Aspergillus Dematiaceous environmental moulds: Alternaria Bipolaris Cladosporium Curvularia Drechslera
Epidemiology: Young immunocompetent adults Relapsing rhinosinusitis Unresponsive to: Antibiotics Antihistamines Corticosteroids
M=F Atopic Southern United States
Clinical Features
h/o Chronic rhinosinusitis U/L nasal polyposis Thick yellow-green mucus Bone necrosis of thin walls of sinus Proptosis DNS to opposite side Pt with nasal polyposis responding only to oral corticosteroids
Diagnosis
CT Scan:
Serpiginous opacification of >1 sinus Mucosal thickening Bone erosion No tissue invasion
Microscopic Examination of allergic mucin: Eosinophils Fungal elements
Histologic examination to r/o invasion Lab tests:
Eosinophilia Total serum IgE Specific IgE against fungal Ags +ve skin prick tests
Fungal cultures
AFS
Management Surgical debridement Adjunctive medical management: Oral corticosteroids Specific allergen immunotherapy Nasal corticosteroids Antihistamines Antileukotrienes Sinonasal saline lavage
Systemic antifungals: not
effective
Mycotic Diseases of the Throat Candidiasis Histoplasmosis Paracoccidioidomycosis Blastomycosis Coccidioidomycosis Cryptococcosis
Candidiasis Infections caused by organisms of
genus Candida Etiological Agents: C. C. C. C. C.
albicans glabrata krusei tropicalis parapsilosis
Epidemiology C. albicans: Commensal in the mouth of 40% ppl No. ↑es with: Tobacco smoking Dentures
Host factors: General:
Debilitated pts.:
Broad spectrum antibiotics Corticosteroids DM Severe nutritional deficiencies Immunosuppressive diseases eg AIDS
Local:
Trauma:
Unhygienic dentures Ill fitting dentures
Tobacco smoking
Clinical Manifestation Clinical forms: Pseudomembranous Erythematous (or atrophic) Hyperplastic (or hypertrophic)
Pseudomembranous
Pts using steroid inhalers Immunocompromised individuals Neonates Terminally ill pts Lesions: Raised white Surface of: Tongue Soft & hard palate Buccal mucosa Tonsils Confluent plaques Painless
Throat involvement: Severe dysphagia Pseudomembrane wiped off: Pseudomembranous
Candidiasis
Candidiasis
Erythematous Associated with: Broad spectrum antibiotic treatment Chronic corticosteroid use HIV
Any part of oral mucosa Lesions: Flat Red Tongue: depappillated areas
Hyperplastic (Candida leukoplakia) Lesions undergo malignant
transformation Lesions: Small, palpable, translucent white areas Large, dense, opaque plaques, hard, rough
Lesions cannot be removed Site: Inner surface of both cheeks Tongue
Other Candidal Lesions Chronic atrophic
candidiasis:
Denture stomatitis Associated with oral prostheses Asymptomatic Soreness Cheilitis
Laryngeal Candidiasis:
Hoarseness Dysphagia Stridor Plaques on laryngeal mucosa
Diagnosis: Clinical Microscopy HPE Culture
Managemen
t: Antifungals Topical Systemic
Mycotic Colonization of Tracheo-oesophageal Voice Biofilm formation Prostheses Invasion of silastic Causative agents:
C. C. C. C.
albicans glabrata krusei tropicalis
Results in: Valve failure Device replacement
Local antifungal therapy:
inadequate Metal coating of prostheses
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